View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7150_low_17 (Length: 303)
Name: NF7150_low_17
Description: NF7150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7150_low_17 |
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| [»] chr3 (2 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 92 - 303
Target Start/End: Original strand, 40740686 - 40740897
Alignment:
| Q |
92 |
agagccgagcctataattttataggaacggccctggtaactaacaatctatagtttaaattatacaaccaatactctcttaaatcaaaatattaaaattc |
191 |
Q |
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| T |
40740686 |
agagccgagcctataattttataggaacggcactggtaactaacaatctatagtttaaattatacaaccaatactctcttaaatcaaaatattaaaattc |
40740785 |
T |
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| Q |
192 |
accactcctatttcatttcttagcttcaaaaactagcctgtcttcataacttttgtgaataagtatgttaattgtttttgtgtaagacaaaactcgacac |
291 |
Q |
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| T |
40740786 |
accactcctatttcatttcttagcttcaaaaactagcctgtcttcataacttttgtgaataagtatgttaattgtttttgtgtaagacaaaactcaacac |
40740885 |
T |
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| Q |
292 |
ttagcttgttct |
303 |
Q |
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|||||||||||| |
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| T |
40740886 |
ttagcttgttct |
40740897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 40740592 - 40740624
Alignment:
| Q |
15 |
agtttttatgtaaaatagtaaacctcaaattat |
47 |
Q |
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| T |
40740592 |
agtttttatgtaaaatagtaaacctcaaattat |
40740624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 139 - 303
Target Start/End: Complemental strand, 17070504 - 17070338
Alignment:
| Q |
139 |
ctatagtttaaattatacaaccaatactct--cttaaatcaaaatattaaaattcaccactcctatttcatttcttagcttcaaaaactagcctgtcttc |
236 |
Q |
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| T |
17070504 |
ctatagtttgaattatacaactaatactctttctttattcaaactatcaaaattcaccacccgtatttctcttcttagcttcaaaaactgatctctcttc |
17070405 |
T |
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| Q |
237 |
ataacttttgtgaataagtatgttaattgtttttgtgtaagacaaaactcgacacttagcttgttct |
303 |
Q |
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| T |
17070404 |
agagcttttgtgaacaagtctgtcaactggtcttgtgtaggacaatactcaacaattagctcgttct |
17070338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 139 - 303
Target Start/End: Original strand, 17577769 - 17577935
Alignment:
| Q |
139 |
ctatagtttaaattatacaaccaatactct--cttaaatcaaaatattaaaattcaccactcctatttcatttcttagcttcaaaaactagcctgtcttc |
236 |
Q |
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| T |
17577769 |
ctatagtttgaattatacaactaatactctttctttattcaaactatcaaaattcaccacccgtatttctcttcttagcttcaaaaactgatctctcttc |
17577868 |
T |
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| Q |
237 |
ataacttttgtgaataagtatgttaattgtttttgtgtaagacaaaactcgacacttagcttgttct |
303 |
Q |
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| T |
17577869 |
agagcttttgtgaacaagtctgtcaactggtcttgtgtaggacaatactcaacaattagctcgttct |
17577935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 140 - 303
Target Start/End: Complemental strand, 29355717 - 29355557
Alignment:
| Q |
140 |
tatagtttaaattatacaaccaatactctcttaaatcaaaatattaaaattcaccactcctatttcatttcttagcttcaaaaactagcctgtcttcata |
239 |
Q |
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|||||||| ||||||||||||||||||| ||||| ||||| ||| ||| |||||| || |||||| |||||| ||||||||||| |||| |||||||| |
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| T |
29355717 |
tatagtttgaattatacaaccaatactc-cttaattcaaactatcaaagttcaccgttcatatttctcttcttaacttcaaaaactggcctctcttcata |
29355619 |
T |
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| Q |
240 |
acttttgtgaataagtatgttaattgtttttgtgtaagacaaaactcgacacttagcttgttct |
303 |
Q |
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| T |
29355618 |
gc--ttgtgaccaagtctgccaattggtcttgtgtaggacaatactcaacacttagcgtgttct |
29355557 |
T |
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