View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7150_low_18 (Length: 302)

Name: NF7150_low_18

Description: NF7150

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF7150_low_18

[»] chr3 (1 HSPs)

Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 197; E-Value: 1e-107

Query Start/End: Original strand, 9 - 302

Target Start/End: Complemental strand, 15798695 - 15798404

Alignment:

Q	9	gaaatgaaaatacaaaaacaga--gaaaacaacatactcattcactagcacgtaaacaggcacatctgtgatgcttttcgcaataaaaataatggtagtt	106	Q
		\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|
T	15798695	gaaatgaagatacaaaaacagaaagaaaacaacatactcattcactagcacgcaaacaggaacatctgtgatgcttttcgcaataaaaataatggaagtt	15798596	T

Q	107	acaaatttttatgcgattatttgaagaaatttagttatttgattgtataaaaacgatacagttgtaaataaaatcgtttaaatgaagggtgaaactggaa	206	Q
		\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|
T	15798595	acaaaattttatgagattatttgaagaaatttagttatttgattgtataaaaacgatacagttgtaaataaaatcgtttaaatgaagggtgaaaatggaa	15798496	T

Q	207	gagcgnnnnnnnggcacaccaaaactttgaagtaatattataatttcaatttgaacatttaatctcatgtagtatattttaaggcaacatcagtta	302	Q
		\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	15798495	gagcg-aaaaaaggcacacgaaaactttgaaggaatattataacttcaatttgaacattcaatctcat---ttatattttaaggcaacatcagtta	15798404	T

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