View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7150_low_19 (Length: 261)
Name: NF7150_low_19
Description: NF7150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7150_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 13 - 247
Target Start/End: Original strand, 5591375 - 5591609
Alignment:
| Q |
13 |
aatataacatttccaaaatcatactaacacaatgattttgtctaattcatcgtaaattcaaacatacactaaactttgaaaatccagtctctacaaacat |
112 |
Q |
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| T |
5591375 |
aatataacatttccaaaatcatactaacataatgattttgtctaattcatcgtaaattcaaacgtacactaaactttgaaaattcagtctctacaaacat |
5591474 |
T |
|
| Q |
113 |
aagttaatgtaatctttaaacactttttatcaactttgcaagtgaacaatgatttcatgagacatataaaaactagatataaaagaaactcatattataa |
212 |
Q |
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| T |
5591475 |
aagttaatgtaatctttaaactctttttatcaactttgcaagtgaacaatgatttcatgagacatataaaaactagatatgaaagaaactcatattataa |
5591574 |
T |
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| Q |
213 |
gatgtaagaattgtaacacatatgatgaagttttt |
247 |
Q |
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| T |
5591575 |
gatgtaagaattgtaacacatatgatgaagttttt |
5591609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 142 - 247
Target Start/End: Original strand, 975966 - 976071
Alignment:
| Q |
142 |
tcaactttgcaagtgaacaatgatttcatgagacatataaaaactagatataaaagaaactcatatt-ataagatgtaagaattgtaacacatatgatga |
240 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||| ||||| ||||||||| |
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| T |
975966 |
tcaactttgcaagtgaacaatgatttcatgagacatataaaaactagatatgaaagaaactcatattaaaaagatgtaagaattataaca-atatgatga |
976064 |
T |
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| Q |
241 |
agttttt |
247 |
Q |
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||||||| |
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| T |
976065 |
agttttt |
976071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 27 - 85
Target Start/End: Original strand, 975845 - 975903
Alignment:
| Q |
27 |
aaaatcatactaacacaatgattttgtctaattcatcgtaaattcaaacatacactaaa |
85 |
Q |
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||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
975845 |
aaaattatactgacacaatgactttgtctaattcatcgtaaattcaaacatacactaaa |
975903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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