View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7150_low_2 (Length: 738)

Name: NF7150_low_2
Description: NF7150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7150_low_2
NF7150_low_2
[»] chr1 (10 HSPs)
chr1 (345-720)||(32250993-32251368)
chr1 (140-346)||(32251424-32251630)
chr1 (345-496)||(32246137-32246285)
chr1 (152-346)||(32246341-32246535)
chr1 (620-720)||(32245250-32245353)
chr1 (17-77)||(32251693-32251753)
chr1 (525-576)||(32245445-32245496)
chr1 (17-57)||(32246636-32246676)
chr1 (501-532)||(32256441-32256472)
chr1 (498-532)||(32246032-32246066)
[»] chr8 (6 HSPs)
chr8 (232-308)||(10191230-10191306)
chr8 (232-296)||(27895517-27895581)
chr8 (232-296)||(27907756-27907820)
chr8 (232-296)||(27954175-27954239)
chr8 (232-294)||(27970870-27970932)
chr8 (232-294)||(28028139-28028201)
[»] chr3 (2 HSPs)
chr3 (249-296)||(50977332-50977379)
chr3 (249-296)||(51080464-51080511)


Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 345 - 720
Target Start/End: Complemental strand, 32251368 - 32250993
Alignment:
Q  345 aagcatataactgattgctcaaaagacttcttgaacacactttatatgtaagtttatagaagttgtgtaacttggactttcgaataaccctagacgttga 444  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32251368 aagcatataactgattgctcaaaagacttcttgaacacacttgatatgtaagtttatagaagttgtgtaacttggactttcgaataaccctagacgttga 32251269  T
Q  445 tttttgaaaatctttttcgaaatagtagtcttcgaacttttggcttgttctcaattttgaaacgagaggctacccctgcaatgagattaatcctgataca 544  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  32251268 tttttgaaaatctttttcgaaatagtagtcttcgaacttttggcttattctcaattttgaaacgagaggctacccctgctatgagattaatcctgataca 32251169  T
Q  545 gttgcaaatagattaaaacaacaggagaagcagcaaactctacgcgtagaagctctgcaagattattagtaccaacagaaaagacacaaaaatgttgaca 644  Q
    |||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  32251168 gttgcaaatagattaatacaacaggagaagcagcaaacactacacgtagaagctctgctagattattagtaccaacagaaaagacacaaaaatgtagaca 32251069  T
Q  645 tggaaattttggattatcatgtgtttttaaaggtctttatgttagaaattgagtttttgaattttattttatacat 720  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32251068 tggaaattttggattatcatgtgtttttaaaggtctttatgttagaaattgagtttttgaattttattttatacat 32250993  T

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Target: chr1; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 140 - 346
Target Start/End: Complemental strand, 32251630 - 32251424
Alignment:
Q  140 atattaatatagataggtttgattgtttcatacatcactgatttaatattgtcagtaagaaattatcccgtgagggcggatgccttatctgttaggcata 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  32251630 atattaatatagataggtttgattgtttcatacatcactgatttaatattgtcaggaagaagttatcccgtgagggcggatgccttatctgttaggcata 32251531  T
Q  240 gttttgtgaaacagaaatgaactcatttacatagagtttgattatacaatttatagactaagaaataaattaatctccaacacatgtcgatgtcatgtgt 339  Q
    | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  32251530 gctttgtgaaacagaaatgaactcatttacatggagtttgattatacaatttatagactaagaaataaattaatctctaacacatgtcgatgtcatgtgt 32251431  T
Q  340 cttctaa 346  Q
    |||||||    
T  32251430 cttctaa 32251424  T

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Target: chr1; HSP #3
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 345 - 496
Target Start/End: Complemental strand, 32246285 - 32246137
Alignment:
Q  345 aagcatataactgattgctcaaaagacttcttgaacacactttatatgtaagtttatagaagttgtgtaacttggactttcgaataaccctagacgttga 444  Q
    |||||||||||||||||||||||||||||| |||||| | || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32246285 aagcatataactgattgctcaaaagacttcctgaacatagttgatatgaaagtttatagaagttgtgtaacttggactttcgaataaccctagacgttga 32246186  T
Q  445 tttttgaaaatctttttcgaaatagtagtcttcgaacttttggcttgttctc 496  Q
    ||||||||||||   |||||||||| ||||||||||||| ||||||||||||    
T  32246185 tttttgaaaatc---ttcgaaatagcagtcttcgaacttctggcttgttctc 32246137  T

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Target: chr1; HSP #4
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 152 - 346
Target Start/End: Complemental strand, 32246535 - 32246341
Alignment:
Q  152 ataggtttgattgtttcatacatcactgatttaatattgtcagtaagaaattatcccgtgagggcggatgccttatctgttaggcatagttttgtgaaac 251  Q
    |||||||||| |||||||||||||| ||||| ||||||||||||||||| ||||||||||||||| |||||  | ||| |||| |||||| ||||| ||     
T  32246535 ataggtttgaatgtttcatacatcaatgattcaatattgtcagtaagaagttatcccgtgagggcagatgcgctgtctattagacatagtgttgtggaat 32246436  T
Q  252 agaaatgaactcatttacatagagtttgattatacaatttatagactaagaaataaattaatctccaacacatgtcgatgtcatgtgtcttctaa 346  Q
    | |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||  ||||  ||| ||||||| |||||||||||    
T  32246435 ataaatgaactcatttacatggagtttgattatacaatttatggactaagaaataaattaatctgtaacatgtgtggatgtcacgtgtcttctaa 32246341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 620 - 720
Target Start/End: Complemental strand, 32245353 - 32245250
Alignment:
Q  620 cagaaaagacacaaaaatgttgacatggaaatttt-ggattatcatgtgtttttaaaggt--ctttatgttagaaattgagtttttgaattttattttat 716  Q
    |||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||    
T  32245353 cagaaaggacacaaaaatgtagacatggaaatttttggattatcatgtgtttttaaaggtaaaggtatgttagaaattgagtttttgaattttattttat 32245254  T
Q  717 acat 720  Q
    ||||    
T  32245253 acat 32245250  T

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Target: chr1; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 32251753 - 32251693
Alignment:
Q  17 aatataaagcttaacatagctttccagtagcactgtatctattttagtgcacagtttgaag 77  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  32251753 aatataaagcttaacatagctttccagtagcactgtatctattttagtgcacagttagaag 32251693  T

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Target: chr1; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 525 - 576
Target Start/End: Complemental strand, 32245496 - 32245445
Alignment:
Q  525 atgagattaatcctgatacagttgcaaatagattaaaacaacaggagaagca 576  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  32245496 atgagtttagtcctgatacagttgcaaatagattaaaacaacaggagaagca 32245445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 32246676 - 32246636
Alignment:
Q  17 aatataaagcttaacatagctttccagtagcactgtatcta 57  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  32246676 aatataaagcttaacatagctttccagtagcactatatcta 32246636  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 501 - 532
Target Start/End: Complemental strand, 32256472 - 32256441
Alignment:
Q  501 ttgaaacgagaggctacccctgcaatgagatt 532  Q
    ||||||||||||||||||||||||||||||||    
T  32256472 ttgaaacgagaggctacccctgcaatgagatt 32256441  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 498 - 532
Target Start/End: Complemental strand, 32246066 - 32246032
Alignment:
Q  498 attttgaaacgagaggctacccctgcaatgagatt 532  Q
    ||||| |||||||||||||||||||||||||||||    
T  32246066 attttcaaacgagaggctacccctgcaatgagatt 32246032  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 232 - 308
Target Start/End: Original strand, 10191230 - 10191306
Alignment:
Q  232 taggcatagttttgtgaaacagaaatgaactcatttacatagagtttgattatacaatttatagactaagaaataaa 308  Q
    ||||| ||||||| ||||||  |||||||||| ||| ||| |||||||||| || |||||||||||||| |||||||    
T  10191230 taggcttagttttatgaaacgaaaatgaactcttttgcatcgagtttgattttataatttatagactaacaaataaa 10191306  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 232 - 296
Target Start/End: Complemental strand, 27895581 - 27895517
Alignment:
Q  232 taggcatagttttgtgaaacagaaatgaactcatttacatagagtttgattatacaatttataga 296  Q
    |||||||||||||||  || ||||| |||||||||| ||| |||||||| | |||||||||||||    
T  27895581 taggcatagttttgtcgaatagaaacgaactcatttgcatggagtttgagtttacaatttataga 27895517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 232 - 296
Target Start/End: Complemental strand, 27907820 - 27907756
Alignment:
Q  232 taggcatagttttgtgaaacagaaatgaactcatttacatagagtttgattatacaatttataga 296  Q
    |||||||||||||||  || ||||| |||||||||| ||| |||||||| | |||||||||||||    
T  27907820 taggcatagttttgtcgaatagaaacgaactcatttgcatggagtttgagtttacaatttataga 27907756  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 232 - 296
Target Start/End: Complemental strand, 27954239 - 27954175
Alignment:
Q  232 taggcatagttttgtgaaacagaaatgaactcatttacatagagtttgattatacaatttataga 296  Q
    |||||||||||||||  || ||||| |||||||||| ||| |||||||| | |||||||||||||    
T  27954239 taggcatagttttgtcgaatagaaacgaactcatttgcatggagtttgagtttacaatttataga 27954175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 232 - 294
Target Start/End: Complemental strand, 27970932 - 27970870
Alignment:
Q  232 taggcatagttttgtgaaacagaaatgaactcatttacatagagtttgattatacaatttata 294  Q
    ||||||||||||| |  |||||||| |||||||||| ||| |||||||| | |||||||||||    
T  27970932 taggcatagttttatcgaacagaaacgaactcatttgcatggagtttgagtttacaatttata 27970870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 232 - 294
Target Start/End: Complemental strand, 28028201 - 28028139
Alignment:
Q  232 taggcatagttttgtgaaacagaaatgaactcatttacatagagtttgattatacaatttata 294  Q
    ||||||||||||| |  |||||||| |||||||||| ||| |||||||| | |||||||||||    
T  28028201 taggcatagttttatcgaacagaaacgaactcatttgcatggagtttgagtttacaatttata 28028139  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 249 - 296
Target Start/End: Complemental strand, 50977379 - 50977332
Alignment:
Q  249 aacagaaatgaactcatttacatagagtttgattatacaatttataga 296  Q
    ||||||||| ||||||||| |||||||||||||  |||||||||||||    
T  50977379 aacagaaataaactcatttgcatagagtttgatcttacaatttataga 50977332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 249 - 296
Target Start/End: Complemental strand, 51080511 - 51080464
Alignment:
Q  249 aacagaaatgaactcatttacatagagtttgattatacaatttataga 296  Q
    ||||||||| ||||||||| |||||||||||||  |||||||||||||    
T  51080511 aacagaaataaactcatttgcatagagtttgatcttacaatttataga 51080464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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