View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7150_low_23 (Length: 229)
Name: NF7150_low_23
Description: NF7150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7150_low_23 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 11399551 - 11399330
Alignment:
| Q |
7 |
aatttggtttgcatgtgtatgaatgattttgaaagcatgacacaagtctttattcgaagatggagttggttaaaaggcgaaagtaaaaggatttaaattc |
106 |
Q |
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| T |
11399551 |
aatttggtttgcatgtgtatgaatgattttgaaagcatgacacaagtctatattcgaagatggagttggttaaa-ggcgaaagtaaaaggatttaaattc |
11399453 |
T |
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| Q |
107 |
agagtggagttatcagccgttagtctgtttggagttgaagccaaatgggtgagttcgtatataattgtcattgtatgttcccaaatcgctgctgttctgt |
206 |
Q |
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| T |
11399452 |
agagtggagttatcagccgttagtctgtttggagttgaagccaaatgggtgagttcgtatataattgtcattgtatgttcccaaatcgctgctgttctgt |
11399353 |
T |
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| Q |
207 |
tttgtagaggatggtcgtggatt |
229 |
Q |
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| T |
11399352 |
tttgtagaggatggtcgtggatt |
11399330 |
T |
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