View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7150_low_3 (Length: 665)
Name: NF7150_low_3
Description: NF7150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7150_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 572; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 1 - 651
Target Start/End: Complemental strand, 35971404 - 35970752
Alignment:
| Q |
1 |
ccacacacattagagtgaaattgtatgtaaaatgtgaaattgatgtaacctactacttcatataatcatattgttttccttttctagtcattcctaggca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35971404 |
ccacacacattagagtgaaattgtatgtaaaatgtgaaattgatgtaacctactacttcatataatcatattgttttccttttctagtcattcctaggca |
35971305 |
T |
|
| Q |
101 |
caagagtaaaagggaagatatacaag-gtgtttggtaattttcatcagtttgagaagtaggtaatttgtttccatgtaataaatatgaaggtggttcaga |
199 |
Q |
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||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
35971304 |
caagagtaaaagggaagatattcatgcgtgtttggtaattttcatcagtttgagaagtaggtaatttgtttccctgtaataaatatgaaggtggttcaga |
35971205 |
T |
|
| Q |
200 |
ttttgacggtttcagagaggtagggtttggcaagtctggtgtaggtagaggctcaactgttgtaagtgaaggtggttcaggttacatagaggtatgattt |
299 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35971204 |
ttttgacggtttcagagaggtagggtttggcaaggctggtaaaggtagaggctcaactgttgtaagtgaaggtggttcaggttacatagaggtatgattt |
35971105 |
T |
|
| Q |
300 |
tgcacgtttggttgttccggtaggggtggggatggttcggtaggagatatggtaatgtgggaag-taaagtgtcggttacaatttcaatgggtgtattgg |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
35971104 |
tgcacgtttggttgttccggtaggggtggggatggttcggcaggagatatggtaatgtgggaagttaaggtgtcggttacaatttcaatgggtgtattgg |
35971005 |
T |
|
| Q |
399 |
tttcgagacttggggtgtttcgagagaatgnnnnnnntgctttccacaaattggatatggcaagatatgcatgttctgtaatttttgtagttaaagcaaa |
498 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
35971004 |
tttcgagacttggggtgtttcgagagaatgaaaaaaatgctttccacaaattggatatggcaagatatgcatgttctgtaatttttgaagttgaagcaaa |
35970905 |
T |
|
| Q |
499 |
tgtgtgcactctgtgtgaggttatagtcaaggaaagtgcatggttcagatcgaggttcaagtttgttgtgggtgtagggtttgaaccatggaaaccataa |
598 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35970904 |
tgtgtgcactctgtgtgaggttatagtcaaggaaagtgcatggttcagatcgaggttcaagtttgttgtgggtgtagggtttgaaccatggaaaccataa |
35970805 |
T |
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| Q |
599 |
gcaaccaaaggttttgagcttggtatagttaggtggattagaccaaaaatgtg |
651 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
35970804 |
gcaaccaaaggttttgagcttggtatagttaggtggattagaccaagaatgtg |
35970752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 35951340 - 35951219
Alignment:
| Q |
1 |
ccacacacattagagtgaaattgtatgtaaaatgtgaaattgatgtaacctactacttcatataatcatattgttttcctt-ttctagtcattcctaggc |
99 |
Q |
| |
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||||| |||||||||| | ||||||||||| |||||| ||||||||||||||| ||| ||||||||||||||||||||| | ||||||||| |||||| |
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| T |
35951340 |
ccacaaacattagagtaacattgtatgtaacctgtgaagttgatgtaacctactttttcctataatcatattgttttccttgtcctagtcattgctaggc |
35951241 |
T |
|
| Q |
100 |
acaagagtaaaagggaagatat |
121 |
Q |
| |
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| ||||||||||| ||| |||| |
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| T |
35951240 |
agaagagtaaaagcgaaaatat |
35951219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 81
Target Start/End: Complemental strand, 35978502 - 35978430
Alignment:
| Q |
9 |
attagagtgaaattgtatgtaaaatgtgaaattgatgtaacctactacttcatataatcatattgttttcctt |
81 |
Q |
| |
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||||||| ||||||||||||| |||||| ||||||||||||| || ||| |||||||| |||||||||||| |
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| T |
35978502 |
attagagaaaaattgtatgtaacctgtgaatttgatgtaacctagtagttcctataatcaaattgttttcctt |
35978430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 520 - 622
Target Start/End: Original strand, 19732604 - 19732706
Alignment:
| Q |
520 |
tatagtcaaggaaagtgcatggttcagatcgaggttcaagtttgttgtgggtgtagggtttgaaccatggaaaccataagcaaccaaaggttttgagctt |
619 |
Q |
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||||| ||||||| ||||||||||||||| ||||| ||||||||||| ||||| ||||| | ||| ||||| ||||||||||||||| |||| ||||| |
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| T |
19732604 |
tatagccaaggaatatgcatggttcagatcttggttcgagtttgttgtgtgtgtaaggtttaagccaaggaaagcataagcaaccaaagattttaagctt |
19732703 |
T |
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| Q |
620 |
ggt |
622 |
Q |
| |
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||| |
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| T |
19732704 |
ggt |
19732706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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