View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7150_low_4 (Length: 629)
Name: NF7150_low_4
Description: NF7150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7150_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 492; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 17 - 610
Target Start/End: Complemental strand, 4749739 - 4749142
Alignment:
| Q |
17 |
aagatatttcatttgcctaatttccgtatgtgtaattcctttttgatcggaaggccttcttgccataatctcttcttgttctttctgaaagggttcatag |
116 |
Q |
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| T |
4749739 |
aagatatttcatttgcctaatttccgtatgtgtaagtcctttttgatcggaaggccttcttgccataatctcttcttgttctttctgaaagggttcatag |
4749640 |
T |
|
| Q |
117 |
ttttgtttgttnnnnnnnnnn-cagtaacaaattttgaaaatgccacattaattaatagtattaaaaccttggctctttcgaagacatgtggatgattag |
215 |
Q |
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| T |
4749639 |
ttttgtttgttaaaaaaaaaaacagtaacaaattttgaaaatgccacattaattaatagtattaaaaccttggctctttcgaagacatgtggatgattag |
4749540 |
T |
|
| Q |
216 |
tgaggttgataacggtccacaaaacaccataagcagagctttcatgaccagctaacaagaacaaaagaagcaagtctataatgtcttcatcttccaactt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4749539 |
tgaggttgataacggtccacaaaacaccataagcagagctttcatgaccagctaacaagaacaaaagaagcaagtctataatgtcttcatcttccaactt |
4749440 |
T |
|
| Q |
316 |
ctcaccctcgtcgtctctggcttccatcaacaactccatcaaatcnnnnnnngtctgttgtttttcattattattgtttctcctcttatgatccaccaag |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4749439 |
ctcaccctcgtcgtctctggcttccatcaacaactccatcaaatctttttttgtctgttgtttttcattattattgtttctcctcttatgatccaccaaa |
4749340 |
T |
|
| Q |
416 |
cctttcaacagcttcaccaacttctttcgtgcctaaacacaataggannnnnnnaaatgtaactataaggtgtgaatcaaattgtgtacttagatgaata |
515 |
Q |
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| T |
4749339 |
cctttcaacagcttcaccaacttctttcgtgcctaaacacaataggatttttttaaatgtaactataaggtgtaaatcaaattgtgtacttagatgaata |
4749240 |
T |
|
| Q |
516 |
aatgagtatataat---ttaccttgagtgctttatagaatggaaagccaggaagattgatcgattgggacctcattcctcgaagcaaatcaatgtaca |
610 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4749239 |
aatgagtatataattaattaccttgagtgctttatagaatggaaagccaggaagattgatcgattgggacctcattcctcgaagcaaatcaatgtaca |
4749142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 182 - 456
Target Start/End: Complemental strand, 4758054 - 4757783
Alignment:
| Q |
182 |
accttggctctttcgaagacatgtggatgattagtgaggttgataacggtccacaaaacaccataagcagagctttcatgaccagctaacaagaacaaaa |
281 |
Q |
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|||||||| |||| ||||||||||||||||| | |||||| |||| |||||||||| |||| |||||||||||||||||||||||||||||||| || |
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| T |
4758054 |
accttggccctttggaagacatgtggatgatcaatgaggtaaataatagtccacaaaattccatgagcagagctttcatgaccagctaacaagaacacaa |
4757955 |
T |
|
| Q |
282 |
gaagcaagtctataatgtcttcatcttccaacttctcaccctcgtcgtctctggcttccatcaacaactccatcaaatcnnnnnnngtctgttgtttttc |
381 |
Q |
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||||||||||||||||||||||||| |||||| || |||||| || ||| || |||||||||| || ||||||| ||| || | |||| | |
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| T |
4757954 |
gaagcaagtctataatgtcttcatcctccaacatcctaccctcttcatctttgacttccatcaataaatccatcatatcttttttcatc---ttttttac |
4757858 |
T |
|
| Q |
382 |
attattattgtttctcctcttatgatccaccaagcctttcaacagcttcaccaacttctttcgtgcctaaacaca |
456 |
Q |
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|||||||| || ||||| || |||||||||||| ||| ||| ||||||| ||||||||||| |||||||||||| |
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| T |
4757857 |
tttattattattcctccttttttgatccaccaaggcttgcaatagcttcatcaacttctttcttgcctaaacaca |
4757783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 4758285 - 4758195
Alignment:
| Q |
17 |
aagatatttcatttgcctaatttccgtatgtgtaattcctttttgatcggaaggccttcttgccataatctcttcttgttctttctgaaag |
107 |
Q |
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|||||||| ||||||| |||||||| || | | | |||||||||| |||||||||| || |||| |||||||||||||||||||||||| |
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| T |
4758285 |
aagatattgcatttgcttaatttccttaaggttcagtcctttttgagtggaaggccttgtttccatgatctcttcttgttctttctgaaag |
4758195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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