View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7150_low_6 (Length: 497)
Name: NF7150_low_6
Description: NF7150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7150_low_6 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 66 - 497
Target Start/End: Original strand, 48013470 - 48013911
Alignment:
| Q |
66 |
agggcacggtgcagttgactgggattttattaatccacatgcaatcagattccaaatcctatagcatcaacaacaaagtcatgtgcacataattcttaga |
165 |
Q |
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| T |
48013470 |
agggcacggtgcagttgactgggattttattaatccacatgcaatcagataccaaatcctatagcatcaacaacaaagtcatgtgcacataattcttaga |
48013569 |
T |
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| Q |
166 |
ataatcactatccaaatagaattcgaaataggattttataacaatcatannnnnnnagtttcaattcaaactcatgatcgttaat----------aacaa |
255 |
Q |
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| T |
48013570 |
ataatcactatccaaatagaattcgaaataggattttataacaatcatatttttttagtttgaattcaaactcatgatcgttaattaaaagaaataacaa |
48013669 |
T |
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| Q |
256 |
tcatctcgttcgaacatttttggatcaatgagatagaatcttaaaagaaataatcatattgaaaagataataaactgattcaataaactctccagataaa |
355 |
Q |
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| T |
48013670 |
tcatctcgttcgaacatttttggatcaatgagatagaatcttaaaagaaataatcatattgaaaagataatgaactgattcaataaactctccagataaa |
48013769 |
T |
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| Q |
356 |
aagcaattaaccaactaagttttaaccgactctatcaaactaacaaaatctacatgcatgctgtaatagcatacagttctatttcacaatttatttataa |
455 |
Q |
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| T |
48013770 |
aagcaattaaccaactaagttttaaccgactctatcaaactaacaaaatctacatgcatactgtaatagcatacagttctatttcacaatttatttataa |
48013869 |
T |
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| Q |
456 |
ttactacttttgaaatatcaatcattgttttagtgctaaaat |
497 |
Q |
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| T |
48013870 |
ttactacttttgaaatatcaatcattgttttagtgctaaaat |
48013911 |
T |
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