View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7150_low_8 (Length: 450)

Name: NF7150_low_8
Description: NF7150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7150_low_8
NF7150_low_8
[»] chr5 (5 HSPs)
chr5 (7-275)||(14504000-14504271)
chr5 (366-430)||(14503845-14503909)
chr5 (101-281)||(35160758-35160939)
chr5 (113-260)||(7775315-7775463)
chr5 (109-279)||(19677169-19677343)
[»] scaffold0251 (1 HSPs)
scaffold0251 (106-273)||(8191-8361)
[»] chr8 (7 HSPs)
chr8 (103-278)||(15081450-15081627)
chr8 (101-240)||(9295250-9295392)
chr8 (158-278)||(38082174-38082298)
chr8 (124-253)||(18180736-18180869)
chr8 (215-262)||(10404873-10404920)
chr8 (112-235)||(10456238-10456364)
chr8 (374-416)||(2262493-2262535)
[»] chr7 (4 HSPs)
chr7 (101-275)||(22572419-22572594)
chr7 (99-234)||(32936789-32936926)
chr7 (176-253)||(13882795-13882872)
chr7 (176-253)||(13886297-13886374)
[»] chr2 (2 HSPs)
chr2 (105-235)||(5841225-5841358)
chr2 (128-253)||(8781416-8781544)
[»] chr4 (5 HSPs)
chr4 (174-255)||(38223134-38223215)
chr4 (174-278)||(15634541-15634646)
chr4 (101-253)||(13085122-13085278)
chr4 (95-150)||(34943480-34943535)
chr4 (174-263)||(54239501-54239589)
[»] chr6 (5 HSPs)
chr6 (154-278)||(27142560-27142686)
chr6 (113-260)||(8568633-8568781)
chr6 (110-247)||(11190408-11190547)
chr6 (101-279)||(3565614-3565793)
chr6 (174-279)||(2339155-2339261)
[»] chr1 (2 HSPs)
chr1 (206-275)||(50005265-50005333)
chr1 (100-241)||(42071351-42071496)
[»] chr3 (5 HSPs)
chr3 (105-150)||(33528047-33528092)
chr3 (101-278)||(1697031-1697210)
chr3 (101-234)||(25340113-25340250)
chr3 (105-149)||(20398434-20398478)
chr3 (174-253)||(33620113-33620193)


Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 7 - 275
Target Start/End: Complemental strand, 14504271 - 14504000
Alignment:
Q  7 tcgaagaatatctccatgtttttatgaaatgcatgctaaccgacaacagtcatgcttcaatcaaccaataacctaaccagcaacgcagtcaagttgacgc 106  Q
    ||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14504271 tcgaataatatctccatgtttttatgaaatgcatgctaaccgacggcagtcatgcttcaatcaaccaataacctaaccagcaacgcagtcaagttgacgc 14504172  T
Q  107 agaacggaagcaaggaatagcaagcgttaaacctagaagataaaacaacaagttgcaagcaacaaac---tcaaataagagtttccagaatccaccagag 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||| ||    
T  14504171 agaacggaagcaaggaatagcaagcgttaaacctagaagataaaacaacaagttgcaagcaacaaacctgtcaaataagagtttccagaatccaccaaag 14504072  T
Q  204 tagagaaaggatctcgataattttattgaatgcaaaaagtgtctcttaggttacgaaagtactctttaaata 275  Q
    | |||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||    
T  14504071 tggagaaaggatctcgataattttattgaatgcaaaaaatttctcttgggttacgaaagtactctttaaata 14504000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 366 - 430
Target Start/End: Complemental strand, 14503909 - 14503845
Alignment:
Q  366 gttttgggcttcgaaagactaaattcacccctacatcatggtgaagcgatgacttatgctcatga 430  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14503909 gttttgggcttcgaaagactaaattcacccctacatcatggtgaagcgatgacttatgctcatga 14503845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 101 - 281
Target Start/End: Original strand, 35160758 - 35160939
Alignment:
Q  101 tgacgcagaacggaagcaaggaatagcaagcgttaaacctagaagataaaacaacaagttgcaagcaacaaac---tcaaataagagtttccagaatcca 197  Q
    ||||||||||| |||||||||| || ||| |  |||||||| ||||||||   ||||||||||| | ||||||   ||||||||| |||||  || ||||    
T  35160758 tgacgcagaacagaagcaaggattaacaaacactaaacctaaaagataaacagacaagttgcaaacgacaaacctgtcaaataagggtttcaggattcca 35160857  T
Q  198 ccagagtagagaaaggatctcgataattttattgaatgcaaaaagtgtctcttaggttacgaaagtactctttaaatactaagg 281  Q
    ||||| |  ||||| | |||||||||||||||||||||  ||||  | |||||||  ||| ||||| || ||||||||||||||    
T  35160858 ccagaattaagaaaagttctcgataattttattgaatg--aaaacggcctcttagactaccaaagttctgtttaaatactaagg 35160939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 113 - 260
Target Start/End: Complemental strand, 7775463 - 7775315
Alignment:
Q  113 gaagcaaggaatagcaagcgttaaacctagaagataaaacaacaagttgcaagcaacaaac---tcaaataagagtttccagaatccaccagagtagaga 209  Q
    |||||||||| |||||| ||||||||||| ||||||||   ||||||||||||| ||||||   ||||| ||  |||| | |||||||| ||| |  |||    
T  7775463 gaagcaaggattagcaaacgttaaacctaaaagataaacagacaagttgcaagctacaaacctgtcaaaaaaaggttttcggaatccactagaattaaga 7775364  T
Q  210 aaggatctcgataattttattgaatgcaaaaagtgtctcttaggttacgaa 260  Q
    || | ||| ||||||||||||||||| ||||| ||||||||||| ||||||    
T  7775363 aaag-tctagataattttattgaatggaaaaa-tgtctcttaggctacgaa 7775315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 279
Target Start/End: Original strand, 19677169 - 19677343
Alignment:
Q  109 aacggaagcaaggaatagcaagcgttaaacctagaagataaaacaacaagttgcaagcaacaaac---tcaaataagagtttccagaatccaccagagt- 204  Q
    |||||||||||||| ||||||||| ||| |||| ||||||||   | | ||||||||| ||||||   ||||||||| |||| | |||||||||||| |     
T  19677169 aacggaagcaaggattagcaagcgctaagcctaaaagataaacagataggttgcaagcgacaaacctttcaaataagggttttcggaatccaccagaatt 19677268  T
Q  205 -agagaaaggatctcgataattttattgaatgcaaaaagtgtctcttaggttacgaaagtactctttaaatactaa 279  Q
     ||||||| | ||||||  |||||||||||| ||||  ||| |||||||| | |  |||| || ||||||||||||    
T  19677269 gagagaaaag-tctcgaatattttattgaatacaaagtgtgcctcttaggatgcataagttctgtttaaatactaa 19677343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 106 - 273
Target Start/End: Original strand, 8191 - 8361
Alignment:
Q  106 cagaacggaagcaaggaatagcaagcgttaaacctagaagataaaacaacaagttgcaagcaacaaac---tcaaataagagtttccagaatccaccaga 202  Q
    |||||| |||||||||| || |||||  |||||||||||||||||   ||||||||||||| ||||||   ||||||||| |||||  ||||||| ||||    
T  8191 cagaacagaagcaaggattatcaagctctaaacctagaagataaacagacaagttgcaagcgacaaacctgtcaaataagggtttctggaatccatcaga 8290  T
Q  203 gtagag-aaaggatctcgataattttattgaatgcaaaaagtgtctcttaggttacgaaagtactctttaaa 273  Q
     | ||| ||| |||||||| ||||| |||||||| ||||||||||||||||| ||||||||| || ||||||    
T  8291 attgagaaaaagatctcgaaaatttgattgaatg-aaaaagtgtctcttaggctacgaaagttctgtttaaa 8361  T

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Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 103 - 278
Target Start/End: Complemental strand, 15081627 - 15081450
Alignment:
Q  103 acgcagaacggaagcaaggaatagcaagcgttaaacctagaagataaaacaacaagttgcaagcaacaaac---tcaaataagagtttccagaatccacc 199  Q
    |||||||||||||||||||| || ||| || ||||| ||  |||||||   ||||||||||||| ||||||   ||||||||  |||||||||||||||     
T  15081627 acgcagaacggaagcaaggattaacaaacgctaaacataagagataaacacacaagttgcaagcgacaaacctgtcaaataaaggtttccagaatccaca 15081528  T
Q  200 agagtagagaaaggatctcgataattttattgaatgcaaaaagtgtctcttaggttacgaaagtactctttaaatacta 278  Q
    ||| | |||||| | ||||||||||||||||||| | ||||| || |||||||  |||||||||  | |||||||||||    
T  15081527 agaattgagaaaagttctcgataattttattgaa-ggaaaaactgcctcttagactacgaaagttttgtttaaatacta 15081450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 101 - 240
Target Start/End: Complemental strand, 9295392 - 9295250
Alignment:
Q  101 tgacgcagaacggaagcaaggaatagcaagcgttaaacctagaagataaaacaacaagttgcaagcaacaaac---tcaaataagagtttccagaatcca 197  Q
    |||||||||||| ||||||||| |  |||||| |||| |||  |||||||   ||||||||||||| |||||    ||||||| |||||||  |||||||    
T  9295392 tgacgcagaacgaaagcaaggattgacaagcgctaaatctaagagataaacagacaagttgcaagcgacaaatctgtcaaatatgagtttctggaatcca 9295293  T
Q  198 ccagagtagagaaaggatctcgataattttattgaatgcaaaa 240  Q
    ||||| | |||||| | ||||||||||||||||||||| ||||    
T  9295292 ccagaattgagaaaagttctcgataattttattgaatgtaaaa 9295250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 158 - 278
Target Start/End: Original strand, 38082174 - 38082298
Alignment:
Q  158 gttgcaagcaacaaac---tcaaataagagtttccagaatccaccagagtagagaaaggatctcgataatttt-attgaatgcaaaaagtgtctcttagg 253  Q
    ||||||||| ||||||   ||||||||| |||||  ||||| | |||| | |||||| | ||||||||||||| |||||||| |||||||| ||||||||    
T  38082174 gttgcaagcgacaaacatatcaaataagggtttcaggaatctatcagaattgagaaaagttctcgataatttttattgaatgaaaaaagtgcctcttagg 38082273  T
Q  254 ttacgaaagtactctttaaatacta 278  Q
     |||||||||  | |||||||||||    
T  38082274 ctacgaaagttatgtttaaatacta 38082298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 124 - 253
Target Start/End: Original strand, 18180736 - 18180869
Alignment:
Q  124 tagcaagcgttaaacctagaagataaaacaacaagttgcaagcaacaaac---tcaaa-taagagtttccagaatccaccagagtagagaaaggatctcg 219  Q
    ||||||||| |||||||| | ||||||   ||| ||||||||| ||||||   ||||| |||| ||||||||||||||||||| | |||| |  ||||||    
T  18180736 tagcaagcgctaaacctaaaggataaactgacatgttgcaagcgacaaacctatcaaaataagggtttccagaatccaccagaattgagagaaaatctcg 18180835  T
Q  220 -ataattttattgaatgcaaaaagtgtctcttagg 253  Q
     ||||||||||||||| ||||||||| ||||||||    
T  18180836 aataattttattgaat-caaaaagtgcctcttagg 18180869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 215 - 262
Target Start/End: Complemental strand, 10404920 - 10404873
Alignment:
Q  215 tctcgataattttattgaatgcaaaaagtgtctcttaggttacgaaag 262  Q
    ||||||||||||||||||||| |||||||| |||||||| ||||||||    
T  10404920 tctcgataattttattgaatgaaaaaagtgcctcttaggctacgaaag 10404873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 235
Target Start/End: Original strand, 10456238 - 10456364
Alignment:
Q  112 ggaagcaaggaatagcaagcgttaaacctagaagataaaacaacaagttgcaagcaacaaac---tcaaataagagtttccagaatccaccagagtagag 208  Q
    ||||||||||| ||||||||  |||| ||| ||||||||   | ||||||||||| ||||||   ||||| ||| ||||||| |||||||||  || |||    
T  10456238 ggaagcaaggattagcaagctctaaatctaaaagataaatagataagttgcaagcgacaaacctgtcaaaaaagggtttccaaaatccaccaatgttgag 10456337  T
Q  209 aaaggatctcgataattttattgaatg 235  Q
    ||| | || |||||| |||||||||||    
T  10456338 aaaagttcccgataactttattgaatg 10456364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 416
Target Start/End: Complemental strand, 2262535 - 2262493
Alignment:
Q  374 cttcgaaagactaaattcacccctacatcatggtgaagcgatg 416  Q
    ||||||| | |||||||||||| ||||||||||||||||||||    
T  2262535 cttcgaatggctaaattcacccgtacatcatggtgaagcgatg 2262493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 101 - 275
Target Start/End: Original strand, 22572419 - 22572594
Alignment:
Q  101 tgacgcagaacggaagcaaggaatagcaagcgttaaacctagaagataaaacaacaagttgcaagcaacaaa---ctcaaataagagtttccagaatcca 197  Q
    |||||||||||||||||||||| ||||||||| |||||||| ||||||||   ||| ||||||||| |||||    ||||||||| |||||| |||||||    
T  22572419 tgacgcagaacggaagcaaggattagcaagcgctaaacctaaaagataaacagacaggttgcaagcgacaaatctatcaaataagggtttccggaatcca 22572518  T
Q  198 ccagagtagagaaaggatctcgataattttattgaatgcaaaaagtgtctcttaggttacgaaagtactctttaaata 275  Q
    | ||| | |||||| | ||||||| |||||||| | ||  ||||||| |||||||  ||| ||||| || ||||||||    
T  22572519 caagaattgagaaaagttctcgattattttatttattg--aaaagtgcctcttagactaccaaagttctatttaaata 22572594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 99 - 234
Target Start/End: Original strand, 32936789 - 32936926
Alignment:
Q  99 gttgacgcagaacggaagcaaggaatagcaagcgttaaacctagaagataaaacaacaagttgcaagcaacaaa---ctcaaataagagtttccagaatc 195  Q
    ||||||||| |||||| ||||| | ||||||| ||||||||||  || ||||  ||||||||||||||||||||    ||||||||| |||| | |||||    
T  32936789 gttgacgcataacggatgcaagaattagcaagagttaaacctaagagctaaacaaacaagttgcaagcaacaaatatgtcaaataagggttttcggaatc 32936888  T
Q  196 caccagagtagagaaaggatctcgataattttattgaat 234  Q
    ||||| | | ||||||   ||||||||||||||||||||    
T  32936889 caccataattgagaaa-attctcgataattttattgaat 32936926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 253
Target Start/End: Original strand, 13882795 - 13882872
Alignment:
Q  176 aaataagagtttccagaatccaccagagtagagaaaggatctc-gataattttattgaatgcaaaaagtgtctcttagg 253  Q
    ||||||| |||||| |||||||||||| | |||| |  |||||  ||||||||||||||| ||||||||||||||||||    
T  13882795 aaataagggtttccggaatccaccagaattgagagaaaatctcaaataattttattgaat-caaaaagtgtctcttagg 13882872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 253
Target Start/End: Original strand, 13886297 - 13886374
Alignment:
Q  176 aaataagagtttccagaatccaccagagtagagaaaggatctcg-ataattttattgaatgcaaaaagtgtctcttagg 253  Q
    ||||||| ||||||||||||||||| | | |||| |  |||||| || |||||||||||| ||||||||||||||||||    
T  13886297 aaataagggtttccagaatccaccataattgagagaaaatctcgaatgattttattgaat-caaaaagtgtctcttagg 13886374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 105 - 235
Target Start/End: Complemental strand, 5841358 - 5841225
Alignment:
Q  105 gcagaacggaagcaaggaatagcaagcgttaaacctagaagataaaacaacaagttgcaagcaacaaac---tcaaataagagtttccagaatccaccag 201  Q
    ||||||| ||||||| || |||||| || |||||||| ||||||||   ||||||||||||| ||||||   ||||| | | |||| | |||||||| ||    
T  5841358 gcagaacagaagcaaagattagcaaacgctaaacctaaaagataaacatacaagttgcaagcgacaaacctgtcaaacaggggttttcggaatccacaag 5841259  T
Q  202 agtagagaaaggatctcgataattttattgaatg 235  Q
    | | |||||| | |||||||||||||||||||||    
T  5841258 aattgagaaaagttctcgataattttattgaatg 5841225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 253
Target Start/End: Complemental strand, 8781544 - 8781416
Alignment:
Q  128 aagcgttaaacctagaagataaaacaacaagttgcaagcaacaaac---tcaaataagagtttccagaatccaccagagtagagaaaggatctcga-taa 223  Q
    ||||| |||||||| ||||||||   ||| ||||||||| ||||||   ||||||||| ||||| | ||||||||||| | ||||    ||||||| |||    
T  8781544 aagcgctaaacctaaaagataaacagacaggttgcaagcgacaaacctatcaaataagggtttcga-aatccaccagaattgagagtaaatctcgaataa 8781446  T
Q  224 ttttattgaatgcaaaaagtgtctcttagg 253  Q
    |||||||||||| |||||||| ||||||||    
T  8781445 ttttattgaatgaaaaaagtgcctcttagg 8781416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 174 - 255
Target Start/End: Original strand, 38223134 - 38223215
Alignment:
Q  174 tcaaataagagtttccagaatccaccagagtagagaaaggatctcgataatttt-attgaatgcaaaaagtgtctcttaggtt 255  Q
    ||||||||| |||| |||||||||| ||| | |||||| | ||||||||||||| |||||||| |||||||||||||||||||    
T  38223134 tcaaataagggtttacagaatccactagaattgagaaaag-tctcgataatttttattgaatgaaaaaagtgtctcttaggtt 38223215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 174 - 278
Target Start/End: Complemental strand, 15634646 - 15634541
Alignment:
Q  174 tcaaataagagtttccagaatccaccagagtagagaaaggatctcgataattttattgaatg-caaaaagtgtctcttaggttacgaaagtactctttaa 272  Q
    ||||||||||||||   |||||||  ||| ||||||||   ||||||| |||||||||||||  ||||||||||||||||  |||||||||  | |||||    
T  15634646 tcaaataagagtttttggaatccattagaatagagaaaatttctcgattattttattgaatgaaaaaaagtgtctcttagactacgaaagttatgtttaa 15634547  T
Q  273 atacta 278  Q
    ||||||    
T  15634546 atacta 15634541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 253
Target Start/End: Original strand, 13085122 - 13085278
Alignment:
Q  101 tgacgcagaacggaagcaaggaatagcaagcgttaaacctagaagataaaacaacaagttgcaagcaacaaac---tc-aaataagagtttccagaatcc 196  Q
    |||||||| |||||||||||   | ||||||| |||||||| ||||||||   ||| ||||||||| ||||||   || ||||||| |||| | ||||||    
T  13085122 tgacgcagcacggaagcaagagttcgcaagcgctaaacctaaaagataaactgacaggttgcaagcgacaaacctatcaaaataagggttttcggaatcc 13085221  T
Q  197 accagagtagagaaaggatctcg-ataattttattgaatgcaaaaagtgtctcttagg 253  Q
    |||| | | |||| |  |||||| |||||||||||||||  |||||||||||||||||    
T  13085222 accaaaattgagagaaaatctcgaataattttattgaat-aaaaaagtgtctcttagg 13085278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 150
Target Start/End: Original strand, 34943480 - 34943535
Alignment:
Q  95 tcaagttgacgcagaacggaagcaaggaatagcaagcgttaaacctagaagataaa 150  Q
    |||| |||||||||||| ||||  |||| |||||||||||||||||| ||||||||    
T  34943480 tcaatttgacgcagaacagaagtcaggattagcaagcgttaaacctaaaagataaa 34943535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 263
Target Start/End: Complemental strand, 54239589 - 54239501
Alignment:
Q  174 tcaaataagagtttccagaatccaccagagtagagaaaggatctcgataattttattgaatgcaaaaagtgtctcttaggttacgaaagt 263  Q
    ||||||||| |||| | |||||||||| | | |||||| | |||||||||||||||||| || ||||| ||| ||||||| ||| |||||    
T  54239589 tcaaataagggttttcggaatccaccaaaattgagaaaagttctcgataattttattgattg-aaaaactgtatcttaggctaccaaagt 54239501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 154 - 278
Target Start/End: Original strand, 27142560 - 27142686
Alignment:
Q  154 acaagttgcaagcaacaaac---tcaaataagagtttccagaatccaccagagtagagaaaggatctcgataattttattgaatgcaaaaagtgtctctt 250  Q
    ||||||||||||| ||||||   |||| |||| || ||  |||||||||| | | |||||| | | ||||||||||||||||||| ||||| || |||||    
T  27142560 acaagttgcaagcgacaaaccagtcaattaagggtatctggaatccaccataattgagaaaagttttcgataattttattgaatg-aaaaactgcctctt 27142658  T
Q  251 aggttacgaaagtactctttaaatacta 278  Q
    ||| ||||||||| || |||||||||||    
T  27142659 aggctacgaaagttctgtttaaatacta 27142686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 113 - 260
Target Start/End: Original strand, 8568633 - 8568781
Alignment:
Q  113 gaagcaaggaatagcaagcgttaaacctagaagataaaacaacaagttgcaagcaacaaac---tcaaataagagtttccagaatccaccagagtagaga 209  Q
    |||||||||| |||||| || |||||||| ||||||||   ||||||||||||| ||||||   ||||| || ||||| | |||||||| ||| |  |||    
T  8568633 gaagcaaggattagcaaacgctaaacctaaaagataaacagacaagttgcaagctacaaacctgtcaaaaaaaagttttcggaatccactagaattaaga 8568732  T
Q  210 aaggatctcgataattttattgaatgcaaaaagtgtctcttaggttacgaa 260  Q
    || | ||| |||||||||||||||||  |||| ||||||||||| ||||||    
T  8568733 aaag-tctagataattttattgaatg-gaaaactgtctcttaggctacgaa 8568781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 247
Target Start/End: Complemental strand, 11190547 - 11190408
Alignment:
Q  110 acggaagcaaggaatagcaagcgttaaacctagaagataaaacaacaagttgcaagcaacaaac---tcaaataagagtttccagaatccaccagagtag 206  Q
    ||||||||||||  |||||| |  |||||||| || |||||   ||| ||||||||| ||||||   ||||||||| |||||| |||||||||||| | |    
T  11190547 acggaagcaagggttagcaaacactaaacctaaaatataaagagacaggttgcaagcgacaaacctatcaaataag-gtttccggaatccaccagaattg 11190449  T
Q  207 agaaaggatctcg-ataattttattgaatgcaaaaagtgtct 247  Q
    ||| |  |||||| ||||||||||||||| ||||||||||||    
T  11190448 agagaaaatctcgaataattttattgaat-caaaaagtgtct 11190408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 279
Target Start/End: Complemental strand, 3565793 - 3565614
Alignment:
Q  101 tgacgcagaacggaagcaaggaatagcaagcgttaaacctagaagataaaacaacaagttgcaagcaacaaac---tcaaataagagtttccagaatcca 197  Q
    ||||||| || ||||||||||  |||||| || ||||| || |||||||  ||||| |||| |||| | ||||   ||||||||||||||||| ||||||    
T  3565793 tgacgcaaaatggaagcaagggttagcaaacgctaaacttaaaagataa--caacaggttgtaagcgataaacctatcaaataagagtttccaaaatcca 3565696  T
Q  198 ccagagt--agagaaaggatctcg-ataattttattgaatgcaaaaagtgtctcttaggttacgaaagtactctttaaatactaa 279  Q
    ||||| |  ||||||| | ||||| ||| ||||||||||||  ||||||| ||||| || |||  |||| || ||||||||||||    
T  3565695 ccagaattgagagaaaag-tctcgaatatttttattgaatg--aaaagtgcctctttggctacataagttctgtttaaatactaa 3565614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 279
Target Start/End: Original strand, 2339155 - 2339261
Alignment:
Q  174 tcaaataagagtttccagaatccaccagagt--agagaaaggatctcgataattttattgaatgcaaaaagtgtctcttaggttacgaaagtactcttta 271  Q
    ||||||||| ||||||  ||||||||||| |  ||||||| | ||||||||||||||||||||| ||||  || |||||||| | |  |||| |||| ||    
T  2339155 tcaaataagggtttccgaaatccaccagaattgagagaaaag-tctcgataattttattgaatgaaaaagatgcctcttaggctgcataagttctctata 2339253  T
Q  272 aatactaa 279  Q
    ||||||||    
T  2339254 aatactaa 2339261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 206 - 275
Target Start/End: Original strand, 50005265 - 50005333
Alignment:
Q  206 gagaaaggatctcgataattttattgaatgcaaaaagtgtctcttaggttacgaaagtactctttaaata 275  Q
    |||||| | ||||||||||||||||||||| |||| |||||||||||| ||||||||| || ||||||||    
T  50005265 gagaaaagttctcgataattttattgaatg-aaaaggtgtctcttaggctacgaaagttctgtttaaata 50005333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 100 - 241
Target Start/End: Original strand, 42071351 - 42071496
Alignment:
Q  100 ttgacgcagaacggaagcaaggaatagcaagcgttaaacctagaagataaaacaacaagttgcaagcaacaaac---tcaaataagagtttccagaatcc 196  Q
    ||||||||||||||||||||||  || |||||| |||||||| ||||||||   ||| ||| ||||  ||||||   ||||||||| |||||  ||||||    
T  42071351 ttgacgcagaacggaagcaagggttaacaagcgctaaacctaaaagataaacagacatgttacaagtgacaaacctatcaaataagcgtttctggaatcc 42071450  T
Q  197 accagagtagagaaaggatctcg-ataattttattgaatgcaaaaa 241  Q
    | || | | |||| || |||||| ||||||||||||||| ||||||    
T  42071451 atcataattgagagagaatctcgaataattttattgaattcaaaaa 42071496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 105 - 150
Target Start/End: Original strand, 33528047 - 33528092
Alignment:
Q  105 gcagaacggaagcaaggaatagcaagcgttaaacctagaagataaa 150  Q
    |||||||||||||||||| ||||||||||||||| || ||||||||    
T  33528047 gcagaacggaagcaaggattagcaagcgttaaacttaaaagataaa 33528092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 278
Target Start/End: Original strand, 1697031 - 1697210
Alignment:
Q  101 tgacgcagaacggaagcaaggaatagcaagcgttaaacctagaagataaaacaacaagttgcaagcaacaaac---tcaaataagagtttccagaatcca 197  Q
    ||||||||||| |||||||||| || ||| || ||||| |  ||||||||   ||| ||||||||| ||||||   ||| ||| ||||||| ||||||||    
T  1697031 tgacgcagaacagaagcaaggattatcaaacgctaaacatgaaagataaatagacaggttgcaagcgacaaacctatcatatatgagtttctagaatcca 1697130  T
Q  198 ccag-agtagagaaaggatctcgataattttattgaatgcaaaaagtgtctcttaggttacgaaagtactctttaaatacta 278  Q
    | || | | |||||| | ||| ||||||||||||||||| ||||||| ||||||| ||| |  |||| || |||||||||||    
T  1697131 ctagaatttgagaaaag-tcttgataattttattgaatg-aaaaagtatctcttaagttgcataagttctgtttaaatacta 1697210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 234
Target Start/End: Original strand, 25340113 - 25340250
Alignment:
Q  101 tgacgcagaacggaagcaaggaatagcaagcgttaaacctagaagataaaacaacaagttgcaagcaacaaac---tcaaataagagtttccagaatcca 197  Q
    ||||||| || ||||||||||| || ||| ||||||||||| ||||||||   ||| |||||| |||||||||   ||||||||| |||||  |||||||    
T  25340113 tgacgcataaaggaagcaaggattaacaaacgttaaacctaaaagataaacagacaggttgcacgcaacaaacctatcaaataagggtttctggaatcca 25340212  T
Q  198 ccagagtagagaaaggatctcgat-aattttattgaat 234  Q
     || | | |||||| | | ||||| |||||||||||||    
T  25340213 tcataattgagaaaagttgtcgataaattttattgaat 25340250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 20398434 - 20398478
Alignment:
Q  105 gcagaacggaagcaaggaatagcaagcgttaaacctagaagataa 149  Q
    |||||||||||||||| | ||||||||| |||||||| |||||||    
T  20398434 gcagaacggaagcaagaattagcaagcgctaaacctaaaagataa 20398478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 253
Target Start/End: Original strand, 33620113 - 33620193
Alignment:
Q  174 tcaaataagagtttccagaatccaccagagtagaga-aaggatctcgataattttattgaatgcaaaaagtgtctcttagg 253  Q
    ||||||||| ||||||||||||| ||||| | |||| ||  ||||||||| |||||||||||  ||||  |||||||||||    
T  33620113 tcaaataagggtttccagaatcctccagaattgagagaaaaatctcgatatttttattgaattaaaaagatgtctcttagg 33620193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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