View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7151_low_1 (Length: 566)
Name: NF7151_low_1
Description: NF7151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7151_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 302; Significance: 1e-169; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 45 - 549
Target Start/End: Complemental strand, 7330181 - 7329694
Alignment:
| Q |
45 |
tggagttttagctcgggtgaaaataggctctgtaaaattagtacaataaacaaacaagtt------ccaataagctgcaatatttttcttcataacattc |
138 |
Q |
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| T |
7330181 |
tggagttttagctcgggtgaaaatagactat--aaaatgagtacaataaccaaacaagttgtagttccaataagctccaatatttttcttcatagcattc |
7330084 |
T |
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| Q |
139 |
tgccgccatgttccatcattcatgcttgtcgcttgatgtgtttgaagctcaggttgtagatctacaattcaaaatgaacccatttaaacaatatatcaat |
238 |
Q |
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| T |
7330083 |
cgcagccatgctccatcattc---------------------tcaagttcaggttgtagatctacaattcaaaatgaacccatttaaacaatatatcgat |
7330005 |
T |
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| Q |
239 |
gnnnnnnnnnnnnnctagaacataaacacaaagtaaatgatgtgaagtgtttcattattctcaagtttatagcatcttataacatgccaacaagttgcaa |
338 |
Q |
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| T |
7330004 |
gaaaaacgaaaaaactagaacataaacacaaagtaaatgatgtgaagtgtttcatcattctcaagtttatagcatcttataatatgccaacaagttgcaa |
7329905 |
T |
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| Q |
339 |
actgtagtgcttggaactatcagatatgtactgcagtggtaatttcataatagagttttcctcattctcaagtttccaaagctcatttcattcatttcag |
438 |
Q |
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| T |
7329904 |
actgtagtgcttggaactatcagatatgtactgcagtggtaatttcctaatagagttttcctcattctcaagtttccaaagttcatttcattcatttcag |
7329805 |
T |
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| Q |
439 |
attcattagttacatgaccttaaatcagaactggatgcatcagactttgtgatcagatttatagaatattgttgtgttgcatcgctattgtcgctactaa |
538 |
Q |
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| T |
7329804 |
attcattagttacatgaccttaaatcagaactggatgcatcagactttgtgatcagatttatagaatattgttgtgttgcattgctattgtcgctactaa |
7329705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 31 - 231
Target Start/End: Original strand, 7309764 - 7309957
Alignment:
| Q |
31 |
ctcataaatagcaatggagttttagctcgggtgaaaataggctctgtaaaattagtacaataaacaaacaagttccaataagctgcaatatttttcttca |
130 |
Q |
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| T |
7309764 |
ctcataaatagcaatggagttttagctcgggtgaaaataggctctataaaattagtacaataaacaaacaagttccaaaaagctgcaatattttgcttca |
7309863 |
T |
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| Q |
131 |
taacattctgccgccatgttccatcattcatgcttgtcgcttgatgtgtttgaagctcaggttgtagatctacaattcaaaatgaacccatttaaacaat |
230 |
Q |
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| T |
7309864 |
tagcattctgccgccatgttccatcattcat-------gcttgatgtgtttgaagctcaggttgtagatctacaattcaaaatgaaccaatttcaacaat |
7309956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 379 - 549
Target Start/End: Original strand, 7310115 - 7310283
Alignment:
| Q |
379 |
aatttcataatagagttttcctcattctcaagtttccaaagctcatttcattcattt-cagattcattagttacatgaccttaaatcagaactggatgca |
477 |
Q |
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| T |
7310115 |
aatttgataataaagttttcccctttctcaagtttccgaagttcttctaattcattttcagatgcatcagtaacatgaccctaaatcagaactggatgca |
7310214 |
T |
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| Q |
478 |
tcagactttgtgatcagatttatagaatattgttgtgttgcatcgctattgtcgctactaaagcaaaccttt |
549 |
Q |
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| T |
7310215 |
tcagactttgtgatcagatttatagaatattgttg---tgcatcgctattgtcgcaactaaagcaaaacttt |
7310283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 433 - 513
Target Start/End: Original strand, 7300846 - 7300924
Alignment:
| Q |
433 |
tttcagattcattagttacatgaccttaaatcagaactggatgcatcagactttgtgatcagatttatagaatattgttgt |
513 |
Q |
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| T |
7300846 |
tttcggatgcattagtaacatgaccctaaatcagaactggatgcatcagac--tgcgatcaaatttacagaatgttgttgt |
7300924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 363
Target Start/End: Original strand, 7309996 - 7310079
Alignment:
| Q |
270 |
agtaaatgatgtgaagtgtttcattattctcaagtttatagcatcttataacatgccaacaagttgcaaactgtagtgcttggaactatcagat |
363 |
Q |
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| T |
7309996 |
agtaaatcatgtgaagtgtttcattattctcaagattatagcct----------gccaacaagttacaaaatgtagtgcttggaacaatcagat |
7310079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 429
Target Start/End: Original strand, 22482274 - 22482321
Alignment:
| Q |
382 |
ttcataatagagttttcctcattctcaagtttccaaagctcatttcat |
429 |
Q |
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| T |
22482274 |
ttcataatagagttttcccgattcttaactttccaaagctcatttcat |
22482321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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