View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7151_low_2 (Length: 556)
Name: NF7151_low_2
Description: NF7151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7151_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 236 - 548
Target Start/End: Original strand, 42850162 - 42850475
Alignment:
| Q |
236 |
atgaataactctaaacaacccacatcatcactcaaagagataacaatacaaagagcaaaaaaggggggaaaattggaacactaatagcacttcaattgga |
335 |
Q |
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| T |
42850162 |
atgaataactctaaacaacccacatcatcgctcaaagagataacaatacaaagagcaaaacaggggggaaaattggaacactaatagcacttcaattgga |
42850261 |
T |
|
| Q |
336 |
ttactaccatgaattagtgatcacacatgacataagaatcactatttataataagccctctcacaagaagactgaacccattgtc-aaaaaacctatcac |
434 |
Q |
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| T |
42850262 |
ttactaccatgaattagtgatcacacatgacataagaatcactatttataataagccctttcacaagaagactgaacccattgtcaaaaaaacctatcac |
42850361 |
T |
|
| Q |
435 |
aaacaaataacaccaaacacatataattccacaagactagcacaaacatcgacaagttgttatgcgaatctgtgaatcaaccattgtgtgtcgcttctac |
534 |
Q |
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| T |
42850362 |
aaacaaataacaccaaacacatataattccacaagactagcacaaacatcgacaagttgttatgcgaatctgtgaatcaaccattgtgtgtcgcttctac |
42850461 |
T |
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| Q |
535 |
ttgtgagtattatc |
548 |
Q |
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| T |
42850462 |
ttgtgagtattatc |
42850475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 42849986 - 42850161
Alignment:
| Q |
18 |
caaacctcccttttattttcagaaaaacaagaacctcccctgctattaacttt-gtttagtttctgttaaaatatacacattgcttgacaaatatctcac |
116 |
Q |
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| T |
42849986 |
caaacctcccttttattttcagaaaaacaagaacctcccctgctattaacttttgtttagtttctgttaaaatatacacattgcttgacaaatatctcac |
42850085 |
T |
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| Q |
117 |
ctcctgtaacaagcagtgacctaggaacgtttcttccctaattttcaagcaatgtgaatctcactaaccaacaaac |
192 |
Q |
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| T |
42850086 |
ctcctgtaacaagcagtgacctaggaacgtttcttccctaattttcaagcaatgtgaatctcactagccaacaaac |
42850161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 204 - 483
Target Start/End: Complemental strand, 30941790 - 30941513
Alignment:
| Q |
204 |
atgcaaactccaagatttaatcaaaatccaatatgaataactctaaacaacccacatcatcactcaaagagataacaatacaaagagcaaaaaagggggg |
303 |
Q |
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| T |
30941790 |
atgcaaactccaatatttaatcaaaatccaatatgagtaactccaagcaacccatgtcatcagtcaaagagataaccatacaaatagcaaaaaa-gggga |
30941692 |
T |
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| Q |
304 |
aaaattggaacactaatagcacttcaattggattactaccatgaattagtgatcacacatgacat-aagaatcactatttataataagccctctcacaag |
402 |
Q |
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||| ||||||||| ||||||||| ||||||||||| ||||| ||| |||||||||| |||||||| |||| ||||||||| ||| | | ||| ||||| | |
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| T |
30941691 |
aaatttggaacaccaatagcactgcaattggattaataccacgaagtagtgatcactcatgacataaagagtcactatttgtaaaatgtcctttcacagg |
30941592 |
T |
|
| Q |
403 |
aagactgaacccattgtcaaaaaacctatcacaaacaaataacaccaaacacatataattccacaagactagcacaaacat |
483 |
Q |
| |
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||||||||||||| |||| |||||||||||||||| ||||||||||||||| ||||||||| | ||||||||| |||||| |
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| T |
30941591 |
aagactgaacccaatgtc--aaaacctatcacaaaccaataacaccaaacacctataattccgccagactagcaaaaacat |
30941513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 70 - 166
Target Start/End: Complemental strand, 30941887 - 30941792
Alignment:
| Q |
70 |
tgtttagtttctgttaaaatatacacattgcttgacaaatatctcacctcctgtaacaagcagtgacctaggaacgtttcttccctaattttcaagc |
166 |
Q |
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||||||| ||| ||| ||||||| |||||||||| ||||||| |||||||| ||||||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
30941887 |
tgtttagcttccgttgaaatataaacattgcttg-caaatatttcacctcccgtaacaagcagtgacctaggaacatttcttctctaattttcaagc |
30941792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 512 - 548
Target Start/End: Complemental strand, 30941156 - 30941120
Alignment:
| Q |
512 |
caaccattgtgtgtcgcttctacttgtgagtattatc |
548 |
Q |
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|||||||||| |||||||||||||||||||||||||| |
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| T |
30941156 |
caaccattgtatgtcgcttctacttgtgagtattatc |
30941120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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