View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7151_low_3 (Length: 484)

Name: NF7151_low_3
Description: NF7151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7151_low_3
NF7151_low_3
[»] chr4 (9 HSPs)
chr4 (1-457)||(31523638-31524089)
chr4 (342-476)||(54568412-54568546)
chr4 (360-472)||(22209231-22209343)
chr4 (340-472)||(53745287-53745419)
chr4 (340-472)||(22206135-22206268)
chr4 (341-442)||(26626129-26626230)
chr4 (388-447)||(8649653-8649712)
chr4 (388-447)||(8661460-8661519)
chr4 (401-472)||(23137517-23137588)
[»] chr3 (2 HSPs)
chr3 (1-457)||(33367411-33367862)
chr3 (401-472)||(33813577-33813648)
[»] chr1 (5 HSPs)
chr1 (1-453)||(49193600-49194047)
chr1 (343-433)||(39333049-39333139)
chr1 (341-442)||(17288023-17288124)
chr1 (420-477)||(45237661-45237718)
chr1 (401-472)||(19039262-19039333)
[»] chr8 (3 HSPs)
chr8 (342-476)||(8813450-8813584)
chr8 (388-472)||(44071388-44071471)
chr8 (411-477)||(16468570-16468636)
[»] chr5 (4 HSPs)
chr5 (342-476)||(12873953-12874087)
chr5 (340-432)||(14988498-14988590)
chr5 (402-472)||(16056592-16056662)
chr5 (432-473)||(11465280-11465321)
[»] chr7 (3 HSPs)
chr7 (343-476)||(37446804-37446937)
chr7 (416-475)||(25839361-25839420)
chr7 (428-472)||(4656262-4656306)
[»] chr6 (6 HSPs)
chr6 (342-475)||(27771102-27771234)
chr6 (340-472)||(24845670-24845802)
chr6 (349-456)||(23389228-23389335)
chr6 (416-476)||(27118798-27118858)
chr6 (395-473)||(24691742-24691820)
chr6 (340-472)||(8497727-8497860)
[»] scaffold0001 (1 HSPs)
scaffold0001 (343-468)||(414412-414537)
[»] chr2 (3 HSPs)
chr2 (340-477)||(9362075-9362212)
chr2 (341-442)||(28495494-28495595)
chr2 (342-468)||(5076837-5076964)


Alignment Details
Target: chr4 (Bit Score: 393; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 457
Target Start/End: Complemental strand, 31524089 - 31523638
Alignment:
Q  1 cgttagtttaacatgttaatataattggtgtccttaaaatagagcttatatatgaagttacatcagtgcatgtcaggttcatttatcctacaaaaacata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  31524089 cgttagtttaacatgttaatataattggtgtccttaaaatagagcttatatatgaagttacatcagtgcatgtcaggttcatttatcctacaaaaacgta 31523990  T
Q  101 gaaggttcatttatttaatggtgggaagtatattatatcatcatgcttatgcacttaataagtgcttagatacaattatatcggtttggcacttagtgta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  31523989 gaaggttcatttatttaatggtgggaagtatattatatcatcatgcttatgcacttagtaagtgcttagatacaattatatcggtttggcacttagtgta 31523890  T
Q  201 aggtgcagttcagttatgtactctgtacttagggtagggtatttggtcgacaggcttatatggattggtgcacctacttatcaacatgctggtacaatta 300  Q
    ||||||||||||| |||||||||||||||     | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31523889 aggtgcagttcagatatgtactctgtact-----tggggtatttggtcgacaggcttatatggattggtgcacctacttatcaacatgctggtacaatta 31523795  T
Q  301 gttaatgtttatatcaacatgcttattaacatgccgagtcctttttcttatgtatactaccatctcattttgttgctattgatgtagtagaaaggaacat 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||||||| |||||||||| |||||||    
T  31523794 gttaatgtttatatcaacatgcttattaacatgccgagtcctttttcttatgtatgttaccatctcattttattgctattgttgtagtagaagggaacat 31523695  T
Q  401 atttttaaatttttataaaacttctattaactatatatgtttacattgttgtgactt 457  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  31523694 atttttatatttttataaaacttttattaactatatatgtttacattgttgtgactt 31523638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 342 - 476
Target Start/End: Complemental strand, 54568546 - 54568412
Alignment:
Q  342 tttttcttatgtatactaccatctcattttgttgctattgatgtagtagaaaggaacatatttttaaatttttataaaacttctattaactatatatgtt 441  Q
    ||||| |||||||| ||||||| ||||||||||||||||| ||| |||||| ||||||| ||||||||||||  ||||||||||||||||||||||||||    
T  54568546 ttttttttatgtatgctaccatttcattttgttgctattgttgtcgtagaagggaacatgtttttaaattttgttaaaacttctattaactatatatgtt 54568447  T
Q  442 tacattgttgtgacttattcgtttaacttcttctc 476  Q
    |||| ||||||||||||||||||||||||||||||    
T  54568446 tacagtgttgtgacttattcgtttaacttcttctc 54568412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 360 - 472
Target Start/End: Original strand, 22209231 - 22209343
Alignment:
Q  360 ccatctcattttgttgctattgatgtagtagaaaggaacatatttttaaatttttataaaacttctattaactatatatgtttacattgttgtgacttat 459  Q
    |||| ||||||||||||||||| |||  ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||| ||    
T  22209231 ccatttcattttgttgctattgttgtcttagaagggaacatatttttaaattgttataaaacttctattaactatatatgtttacatttttgcgactgat 22209330  T
Q  460 tcgtttaacttct 472  Q
    ||| |||||||||    
T  22209331 tcgattaacttct 22209343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 340 - 472
Target Start/End: Complemental strand, 53745419 - 53745287
Alignment:
Q  340 cctttttcttatgtatactaccatctcattttgttgctattgatgtagtagaaaggaacatatttttaaatttttataaaacttctattaactatatatg 439  Q
    ||||||| |||||||| ||||||| | |||||||| |||||| |||  ||||| |||||||||||||||||| || ||||| |||||||||||||||||     
T  53745419 cctttttgttatgtatgctaccatttaattttgttcctattgttgtcttagaagggaacatatttttaaattgttctaaaatttctattaactatatata 53745320  T
Q  440 tttacattgttgtgacttattcgtttaacttct 472  Q
    ||||||||  || |||| ||| | |||||||||    
T  53745319 tttacattaatgcgactgatttgattaacttct 53745287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 340 - 472
Target Start/End: Original strand, 22206135 - 22206268
Alignment:
Q  340 cctttttcttatgtatactaccatctcattttgttgctattgatgtagtagaaaggaacatattttt-aaatttttataaaacttctattaactatatat 438  Q
    ||||||| |||||||| ||||||| |||||||||||||||||  ||| |||||  |||||||||||| ||| |  ||| |||||||||| ||||||||||    
T  22206135 cctttttgttatgtatgctaccatttcattttgttgctattgtagtattagaagtgaacatatttttaaaactgatatgaaacttctatcaactatatat 22206234  T
Q  439 gtttacattgttgtgacttattcgtttaacttct 472  Q
    ||||||||| ||| || | ||||| |||| ||||    
T  22206235 gtttacattattgcgattgattcgattaatttct 22206268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 341 - 442
Target Start/End: Complemental strand, 26626230 - 26626129
Alignment:
Q  341 ctttttcttatgtatactaccatctcattttgttgctattgatgtagtagaaaggaacatatttttaaatttttataaaacttctattaactatatatgt 440  Q
    |||||| |||||||| ||||||| |||||||| || ||||| |||  ||| | ||||||||||||||||||  |||||||||||||||||||  ||||||    
T  26626230 ctttttgttatgtatgctaccatttcattttgctgttattgttgtcttaggagggaacatatttttaaattgctataaaacttctattaactgaatatgt 26626131  T
Q  441 tt 442  Q
    ||    
T  26626130 tt 26626129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 388 - 447
Target Start/End: Complemental strand, 8649712 - 8649653
Alignment:
Q  388 tagaaaggaacatatttttaaatttttataaaacttctattaactatatatgtttacatt 447  Q
    ||||| |||||||||||||||||| || ||||| ||||||||||||||||||||||||||    
T  8649712 tagaagggaacatatttttaaattgttctaaaatttctattaactatatatgtttacatt 8649653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 388 - 447
Target Start/End: Complemental strand, 8661519 - 8661460
Alignment:
Q  388 tagaaaggaacatatttttaaatttttataaaacttctattaactatatatgtttacatt 447  Q
    ||||| |||||||||||||||||| || ||||| ||||||||||||||||||||||||||    
T  8661519 tagaagggaacatatttttaaattgttctaaaatttctattaactatatatgtttacatt 8661460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 401 - 472
Target Start/End: Complemental strand, 23137588 - 23137517
Alignment:
Q  401 atttttaaatttttataaaacttctattaactatatatgtttacattgttgtgacttattcgtttaacttct 472  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||| ||| || | ||||| |||||||||    
T  23137588 atttttaaattgttataaaacttctattaactatatatatttacattattgcgattaattcgattaacttct 23137517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 457
Target Start/End: Original strand, 33367411 - 33367862
Alignment:
Q  1 cgttagtttaacatgttaatataattggtgtccttaaaatagagcttatatatgaagttacatcagtgcatgtcaggttcatttatcctacaaaaacata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  33367411 cgttagtttaacatgttaatataattggtgtccttaaaatagagcttatatatgaagttacattagtgcatgtcaggttcatttatcctacaaaaacata 33367510  T
Q  101 gaaggttcatttatttaatggtgggaagtatattatatcatcatgcttatgcacttaataagtgcttagatacaattatatcggtttggcacttagtgta 200  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  33367511 gaaggttcatttatttaatggtgggaagtatattatataatcatgcttatgcacttagtaagtgcttagatacaattatatcggtttggcacttagtgta 33367610  T
Q  201 aggtgcagttcagttatgtactctgtacttagggtagggtatttggtcgacaggcttatatggattggtgcacctacttatcaacatgctggtacaatta 300  Q
    |||||||||||||||||||||||||||||     |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  33367611 aggtgcagttcagttatgtactctgtact-----tagggtatttggtcgacatgcttatatggattggtgcacctacttatcaacatgctggtacaatta 33367705  T
Q  301 gttaatgtttatatcaacatgcttattaacatgccgagtcctttttcttatgtatactaccatctcattttgttgctattgatgtagtagaaaggaacat 400  Q
    |||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||    
T  33367706 gttaatgtttgtatcaacatgcttattaacatgccgagtcttttttcttatgtatgctaccatctcattttgttgctattgttgtagtagaagggaacat 33367805  T
Q  401 atttttaaatttttataaaacttctattaactatatatgtttacattgttgtgactt 457  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  33367806 atttttatatttttataaaacttttattaactatatatgtttacattgttgtgactt 33367862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 401 - 472
Target Start/End: Complemental strand, 33813648 - 33813577
Alignment:
Q  401 atttttaaatttttataaaacttctattaactatatatgtttacattgttgtgacttattcgtttaacttct 472  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||  ||| || | ||||| |||||||||    
T  33813648 atttttaaattgttataaaacttctaataactatatatgtttacatgattgcgattgattcgattaacttct 33813577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 453
Target Start/End: Complemental strand, 49194047 - 49193600
Alignment:
Q  1 cgttagtttaacatgttaatataattggtgtccttaaaatagagcttatatatgaagttacatcagtgcatgtcaggttcatttatcctacaaaaacata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  49194047 cgttagtttaacatgttaatataattggtgtccttaaaatagagcttatatatgaagttacatcagtgcatgtcaggttcatttatcctacaaaaacgta 49193948  T
Q  101 gaaggttcatttatttaatggtgggaagtatattatatcatcatgcttatgcacttaataagtgcttagatacaattatatcggtttggcacttagtgta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  49193947 gaaggttcatttatttaatggtgggaagtatattatatcatcatgcttatgcacttagtaagtgcttagatacaattatatcggtttggcacttagtgta 49193848  T
Q  201 aggtgcagttcagttatgtactctgtacttagggtagggtatttggtcgacaggcttatatggattggtgcacctacttatcaacatgctggtacaatta 300  Q
    |||||||||||||||||||||| ||||||     | ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  49193847 aggtgcagttcagttatgtactttgtact-----ttgggtatttggtcgacattcttatatggattggtgcacctacttatcaacatgctggtacaatta 49193753  T
Q  301 gttaatgtttatatcaacatgcttattaacatgccgagtcctttttcttatgtatactaccatctcattttgttgctattgatgtagtagaaaggaacat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||| |    
T  49193752 gttaatgtttatatcaacatgcttattaacatgccgagtcctttttcttatgtatgctaccatctcattttgttgctattgttgtagtagaagggaactt 49193653  T
Q  401 atttttaaatttttataaaacttctattaactatatatgtttacattgttgtg 453  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  49193652 atttttatatttttataaaacttttattaactatatatgtttacattgttgtg 49193600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 343 - 433
Target Start/End: Complemental strand, 39333139 - 39333049
Alignment:
Q  343 ttttcttatgtatactaccatctcattttgttgctattgatgtagtagaaaggaacatatttttaaatttttataaaacttctattaacta 433  Q
    |||| |||||||| ||||||| |||||||| |||||||| |||  ||||| ||||||||||||||||||  |||||||||||||| |||||    
T  39333139 ttttgttatgtatgctaccatttcattttgctgctattgttgtcttagaagggaacatatttttaaattgctataaaacttctatcaacta 39333049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 341 - 442
Target Start/End: Original strand, 17288023 - 17288124
Alignment:
Q  341 ctttttcttatgtatactaccatctcattttgttgctattgatgtagtagaaaggaacatatttttaaatttttataaaacttctattaactatatatgt 440  Q
    |||||| |||| ||| ||||||| |||||||| |||||||| |||  ||| | ||||||||||||||||||  |||||||||||||||||||| || |||    
T  17288023 ctttttgttatatatgctaccatttcattttgctgctattgttgtcttaggagggaacatatttttaaattgctataaaacttctattaactaaatctgt 17288122  T
Q  441 tt 442  Q
    ||    
T  17288123 tt 17288124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 420 - 477
Target Start/End: Original strand, 45237661 - 45237718
Alignment:
Q  420 acttctattaactatatatgtttacattgttgtgacttattcgtttaacttcttctca 477  Q
    ||||||||| ||||||||| |||||||| ||| |||||||||||||||||||||||||    
T  45237661 acttctatttactatatatatttacattattgcgacttattcgtttaacttcttctca 45237718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 401 - 472
Target Start/End: Complemental strand, 19039333 - 19039262
Alignment:
Q  401 atttttaaatttttataaaacttctattaactatatatgtttacattgttgtgacttattcgtttaacttct 472  Q
    |||||| |||| |||||||||||||||||| |||||||||||||||| ||| || | ||||| |||| ||||    
T  19039333 attttttaattgttataaaacttctattaaatatatatgtttacattattgcgattgattcgattaatttct 19039262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 3e-46; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 342 - 476
Target Start/End: Original strand, 8813450 - 8813584
Alignment:
Q  342 tttttcttatgtatactaccatctcattttgttgctattgatgtagtagaaaggaacatatttttaaatttttataaaacttctattaactatatatgtt 441  Q
    ||||| |||||||| ||||||| ||| ||||||||||||| ||| |||||| ||||||||||||||||||||  ||||||||||||||||||||||||||    
T  8813450 ttttttttatgtatgctaccatttcaatttgttgctattgttgtcgtagaagggaacatatttttaaattttgttaaaacttctattaactatatatgtt 8813549  T
Q  442 tacattgttgtgacttattcgtttaacttcttctc 476  Q
    |||||||||| ||||||||||||||||||||||||    
T  8813550 tacattgttgcgacttattcgtttaacttcttctc 8813584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 388 - 472
Target Start/End: Complemental strand, 44071471 - 44071388
Alignment:
Q  388 tagaaaggaacatatttttaaatttttataaaacttctattaactatatatgtttacattgttgtgacttattcgtttaacttct 472  Q
    ||||| |||||||||||| ||||| |||||||||||||||||| |||||||||||||||| ||| |||  ||||| |||||||||    
T  44071471 tagaagggaacatatttt-aaattgttataaaacttctattaattatatatgtttacatttttgcgaccaattcgattaacttct 44071388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 411 - 477
Target Start/End: Complemental strand, 16468636 - 16468570
Alignment:
Q  411 ttttataaaacttctattaactatatatgtttacattgttgtgacttattcgtttaacttcttctca 477  Q
    |||||||  ||||||||||||||||||| |||||||| |||  |||||||||||||| |||||||||    
T  16468636 ttttatatgacttctattaactatatatatttacattattgcaacttattcgtttaaattcttctca 16468570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 3e-46; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 342 - 476
Target Start/End: Original strand, 12873953 - 12874087
Alignment:
Q  342 tttttcttatgtatactaccatctcattttgttgctattgatgtagtagaaaggaacatatttttaaatttttataaaacttctattaactatatatgtt 441  Q
    ||||||| | ||||| || ||||||||||||||||||||| ||| |||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  12873953 tttttctgaggtatattatcatctcattttgttgctattgttgtcgtagaagggaacatatttttaaatctttataagacttctattaactatatatgtt 12874052  T
Q  442 tacattgttgtgacttattcgtttaacttcttctc 476  Q
    |||||||||| ||||||||||||||||||||||||    
T  12874053 tacattgttgcgacttattcgtttaacttcttctc 12874087  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 340 - 432
Target Start/End: Original strand, 14988498 - 14988590
Alignment:
Q  340 cctttttcttatgtatactaccatctcattttgttgctattgatgtagtagaaaggaacatatttttaaatttttataaaacttctattaact 432  Q
    ||||||| |||||||| ||||| | ||||||||||||||||| |||  ||||| |||||||||||||||||| |||||||||||| |||||||    
T  14988498 cctttttgttatgtatgctaccttttcattttgttgctattgttgtcttagaagggaacatatttttaaattgttataaaacttccattaact 14988590  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 402 - 472
Target Start/End: Complemental strand, 16056662 - 16056592
Alignment:
Q  402 tttttaaatttttataaaacttctattaactatatatgtttacattgttgtgacttattcgtttaacttct 472  Q
    |||||||||| |||||||||||||||||||||||||| |||||||| ||| || | ||||| |||||||||    
T  16056662 tttttaaattgttataaaacttctattaactatatatatttacattattgcgattgattcgattaacttct 16056592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 473
Target Start/End: Complemental strand, 11465321 - 11465280
Alignment:
Q  432 tatatatgtttacattgttgtgacttattcgtttaacttctt 473  Q
    |||||||||||||||| ||| ||||||||||||||| |||||    
T  11465321 tatatatgtttacattattgcgacttattcgtttaatttctt 11465280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 7e-41; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 343 - 476
Target Start/End: Complemental strand, 37446937 - 37446804
Alignment:
Q  343 ttttcttatgtatactaccatctcattttgttgctattgatgtagtagaaaggaacatatttttaaatttttataaaacttctattaactatatatgttt 442  Q
    |||| |||||||| |||||||  |||||||||||||||| ||| |||||| |||||||||||||||| |||  |||||||||||||||| ||||||||||    
T  37446937 tttttttatgtatgctaccattccattttgttgctattgttgtcgtagaagggaacatatttttaaaatttgttaaaacttctattaacgatatatgttt 37446838  T
Q  443 acattgttgtgacttattcgtttaacttcttctc 476  Q
    ||||||||| ||||||||||||||||||||||||    
T  37446837 acattgttgcgacttattcgtttaacttcttctc 37446804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 416 - 475
Target Start/End: Complemental strand, 25839420 - 25839361
Alignment:
Q  416 taaaacttctattaactatatatgtttacattgttgtgacttattcgtttaacttcttct 475  Q
    |||||||||||| ||||||||||||||||||| ||| ||||||||  |||||||||||||    
T  25839420 taaaacttctatcaactatatatgtttacattattgcgacttatttatttaacttcttct 25839361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 428 - 472
Target Start/End: Complemental strand, 4656306 - 4656262
Alignment:
Q  428 taactatatatgtttacattgttgtgacttattcgtttaacttct 472  Q
    |||||||||||||||| ||||||| || |||||||||||||||||    
T  4656306 taactatatatgtttaaattgttgcgaattattcgtttaacttct 4656262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 7e-41; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 342 - 475
Target Start/End: Original strand, 27771102 - 27771234
Alignment:
Q  342 tttttcttatgtatactaccatctcattttgttgctattgatgtagtagaaaggaacatatttttaaatttttataaaacttctattaactatatatgtt 441  Q
    ||||||| | ||||| || ||||||||||||||||||||| ||| |||||| |||||||||||| |||| ||||||| ||||||||||||||||||||||    
T  27771102 tttttctgaggtatattatcatctcattttgttgctattgttgtcgtagaagggaacatatttt-aaatctttataagacttctattaactatatatgtt 27771200  T
Q  442 tacattgttgtgacttattcgtttaacttcttct 475  Q
    |||||||||| |||||||||||||||||||||||    
T  27771201 tacattgttgcgacttattcgtttaacttcttct 27771234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 340 - 472
Target Start/End: Complemental strand, 24845802 - 24845670
Alignment:
Q  340 cctttttcttatgtatactaccatctcattttgttgctattgatgtagtagaaaggaacatatttttaaatttttataaaacttctattaactatatatg 439  Q
    ||||||| |||||||| ||||||| | |||||||| || ||| |||  ||||| |||||||||||||||||| || ||||| ||||||||||||||||||    
T  24845802 cctttttgttatgtatgctaccatttaattttgttccttttgttgtcttagaagggaacatatttttaaattgttctaaaatttctattaactatatatg 24845703  T
Q  440 tttacattgttgtgacttattcgtttaacttct 472  Q
    ||||||||  || |||| ||||| |||||||||    
T  24845702 tttacattaatgcgactgattcgattaacttct 24845670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 349 - 456
Target Start/End: Original strand, 23389228 - 23389335
Alignment:
Q  349 tatgtatactaccatctcattttgttgctattgatgtagtagaaaggaacatatttttaaatttttataaaacttctattaactatatatgtttacattg 448  Q
    ||||||| ||||||| |||||||||| |||||| |||  || || |||||||||||||||||| ||||||||||||| |||||||||||||||||||||     
T  23389228 tatgtatgctaccatttcattttgtttctattgttgtcttataagggaacatatttttaaattgttataaaacttcttttaactatatatgtttacatta 23389327  T
Q  449 ttgtgact 456  Q
    ||| ||||    
T  23389328 ttgcgact 23389335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 416 - 476
Target Start/End: Complemental strand, 27118858 - 27118798
Alignment:
Q  416 taaaacttctattaactatatatgtttacattgttgtgacttattcgtttaacttcttctc 476  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  27118858 taaaacttctattaactatatatgtttacattgttgcgactcattcgtttaacttcttctc 27118798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 395 - 473
Target Start/End: Original strand, 24691742 - 24691820
Alignment:
Q  395 gaacatatttttaaatttttataaaacttctattaactatatatgtttacattgttgtgacttattcgtttaacttctt 473  Q
    |||||| ||||||||||||||||  |||||||||||||||||||||| ||||||||| |||||||| |||||| |||||    
T  24691742 gaacatgtttttaaatttttatatgacttctattaactatatatgttcacattgttgcgacttatttgtttaagttctt 24691820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 340 - 472
Target Start/End: Complemental strand, 8497860 - 8497727
Alignment:
Q  340 cctttttcttatgtatactaccatctcattttgttgctattgatgtagtagaaaggaacatattttt-aaatttttataaaacttctattaactatatat 438  Q
    ||||||| |||| ||| ||||||| ||||||||||||||||| |||  |||||  |||||||||||| ||| |  |||||||||||||| || |||||||    
T  8497860 cctttttgttatctatgctaccatttcattttgttgctattgttgtcttagaagtgaacatatttttaaaactgatataaaacttctatcaattatatat 8497761  T
Q  439 gtttacattgttgtgacttattcgtttaacttct 472  Q
     |||||||| |||||| | ||||| |||| ||||    
T  8497760 atttacattattgtgaatgattcgattaaattct 8497727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 343 - 468
Target Start/End: Original strand, 414412 - 414537
Alignment:
Q  343 ttttcttatgtatactaccatctcattttgttgctattgatgtagtagaaaggaacatatttttaaatttttataaaacttctattaactatatatgttt 442  Q
    |||| |||||||| ||||||| |||||||||| |||||| ||| |||||| ||||||||| ||||||| ||  ||||| |||||| ||||||||||||||    
T  414412 tttttttatgtatgctaccatttcattttgtttctattgttgtcgtagaagggaacatatgtttaaatgttgttaaaatttctatcaactatatatgttt 414511  T
Q  443 acattgttgtgacttattcgtttaac 468  Q
    |||||| |  ||||||||||||||||    
T  414512 acattgctacgacttattcgtttaac 414537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 340 - 477
Target Start/End: Original strand, 9362075 - 9362212
Alignment:
Q  340 cctttttcttatgtatactaccatctcattttgttgctattgatgtagtagaaaggaacatatttttaaatttttataaaacttctattaactatatatg 439  Q
    |||||||| ||||||| ||| |||||  |||||||| ||| | | | ||| ||  |||||| ||||| ||||||||||  |||||||||||||||||||     
T  9362075 cctttttcatatgtattctatcatctatttttgttgttatggttattgtataagtgaacatgttttttaatttttatatgacttctattaactatatata 9362174  T
Q  440 tttacattgttgtgacttattcgtttaacttcttctca 477  Q
    |||||||||||| |||||||||||||||||||||||||    
T  9362175 tttacattgttgcgacttattcgtttaacttcttctca 9362212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 341 - 442
Target Start/End: Complemental strand, 28495595 - 28495494
Alignment:
Q  341 ctttttcttatgtatactaccatctcattttgttgctattgatgtagtagaaaggaacatatttttaaatttttataaaacttctattaactatatatgt 440  Q
    |||||| |||||||| ||||||| |||||||| |||||||| |||  ||| | ||||||||||||||||||  ||||||| |||||||||||| ||||||    
T  28495595 ctttttgttatgtatgctaccatttcattttgctgctattgttgtcttaggagggaacatatttttaaattgctataaaatttctattaactaaatatgt 28495496  T
Q  441 tt 442  Q
    ||    
T  28495495 tt 28495494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 342 - 468
Target Start/End: Original strand, 5076837 - 5076964
Alignment:
Q  342 tttttcttatgtatactaccatctcatttt-gttgctattgatgtagtagaaaggaacatatttttaaatttttataaaacttctattaactatatatgt 440  Q
    ||||| |||||||| ||||| | ||||||| ||| |||||| ||| |||||| ||||||||| ||||||| ||  ||||| |||||| ||||||||||||    
T  5076837 ttttttttatgtatgctaccgtttcatttttgtttctattgttgtcgtagaagggaacatatgtttaaatgttgttaaaatttctatcaactatatatgt 5076936  T
Q  441 ttacattgttgtgacttattcgtttaac 468  Q
    |||||||| || |||||| | |||||||    
T  5076937 ttacattgctgcgacttaattgtttaac 5076964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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