View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7151_low_4 (Length: 368)
Name: NF7151_low_4
Description: NF7151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7151_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 17106749 - 17106398
Alignment:
| Q |
1 |
gaagcttggacttcaaattctgtatgtagatttcatcaagaacatcctcagcatccattatagcatctttgacattacaaatccatgtcctcacagtaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17106749 |
gaagcttggacttcaaattctgtatgtagatttcatcaagaacatcctcagcatccattatagcatctttgacattacaaatccatgtcctcacagtaga |
17106650 |
T |
|
| Q |
101 |
tcttctgatctgctgctgctcagcatattcaacaacagcattgatggaaatcaaactattgtttaatttcatcagcaaattcccatcgagtttagttcga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17106649 |
tcttctgatctgctgctgctcagcatattcaacaacagcattgatggaaatcaaactattgtttaatttcatcagcaaattcccatcgagtttagttcga |
17106550 |
T |
|
| Q |
201 |
aaataatccatcatttcggttgaagctaacttatcaaccaagacctgaatgattgaattaacaattgcaccgccaacaaattcagcagccatggcagaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17106549 |
aaataatccatcatttcggttgaagctaacttatcaaccaagacctgaatgattgaattaacaattgcaccgccaacaaattcagcagccatggcagaaa |
17106450 |
T |
|
| Q |
301 |
aaggagcaagcaagtgagcaggaaaactagggtttcaaatgcacaaacaaac |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17106449 |
aaggagcaagcaagtgagcaggaaaactagggtttcaaatgcacaaacaaac |
17106398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University