View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7151_low_8 (Length: 319)

Name: NF7151_low_8
Description: NF7151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7151_low_8
NF7151_low_8
[»] chr8 (1 HSPs)
chr8 (1-300)||(38877679-38877978)


Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 38877679 - 38877978
Alignment:
Q  1 tatgggtatgattcactattacatattaacttcatttgtttttcaaatgcagggtggcactcattggactcaatggggactagtcctaggagaagttctg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38877679 tatgggtatgattcactattacatattaacttcatttgtttttcaaatgcagggtggcactcattggactcaatggggactagtcctaggagaagttctg 38877778  T
Q  101 aaatctattgatggaatctaaatttctataagttaatactacatattatacgaccttcagaggacactattattaagattggtacaaattcaattaaggg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38877779 aaatctattgatggaatctaaatttctataagttaatactacatattatacgaccttcagaggacactattattaagattggtacaaattcaattaaggg 38877878  T
Q  201 tggacaataatagtttactgaccgaaatctgaactaacagcgaccaaatctcgtgcagcgggtgagttgatgtagattttggatttttgggtgagaaaag 300  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38877879 tggacaataatagtttactgaccgaaatctgaactaacagtgaccaaatctcgtgcagcgggtgagttgatgtagattttggatttttgggtgagaaaag 38877978  T

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