View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7151_low_9 (Length: 272)
Name: NF7151_low_9
Description: NF7151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7151_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 12 - 257
Target Start/End: Complemental strand, 43109565 - 43109320
Alignment:
| Q |
12 |
catcaatcaaacttagaaaggacatattttgtagagtaattgtgaagattcctaaatataattaatattctatgccaagttcttattccatatcatatca |
111 |
Q |
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| T |
43109565 |
catcaatcaaacttaaaaaggacttattttgtagagtaattgtgaagattcctaaatataattaatattctatgccaagttcttattccatatcatatca |
43109466 |
T |
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| Q |
112 |
ttacagggtctaatcataaatagaatccaagagtctatatcatgtgaagagaataaaaggtttatctatcttggggatggtagtggagattattgtccaa |
211 |
Q |
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| T |
43109465 |
ttacagggtctaatcataaatagaatccaagagtctatatcatgtgaagagaataaaaggtttatctatcttggggatggtagtggagattattgtccaa |
43109366 |
T |
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| Q |
212 |
gcttgaggcttaaagaaaaagactttgtgatgccaaggaagaattt |
257 |
Q |
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| T |
43109365 |
gcttgaggcttaaagaaaaagactttgtgatgccaaggaagaattt |
43109320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 82 - 257
Target Start/End: Complemental strand, 26314546 - 26314371
Alignment:
| Q |
82 |
tatgccaagttcttattccatatcatatcattacagggtctaatcataaatagaatccaagagtctatatcatgtgaagagaataaaaggtttatctatc |
181 |
Q |
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| T |
26314546 |
tatgccaagttcttattctacatcaaatcattacagggactaatcataaagagaatccaagactctatatcaagtgagaaaaataaaagatttatctatc |
26314447 |
T |
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| Q |
182 |
ttggggatggtagtggagattattgtccaagcttgaggcttaaagaaaaagactttgtgatgccaaggaagaattt |
257 |
Q |
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| T |
26314446 |
ttggtgatggtagtggagattattgtccaagcttaagccttaaagaaaaagactttgtgatgccaaggaagaattt |
26314371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 169 - 257
Target Start/End: Complemental strand, 5272061 - 5271973
Alignment:
| Q |
169 |
aggtttatctatcttggggatggtagtggagattattgtccaagcttgaggcttaaagaaaaagactttgtgatgccaaggaagaattt |
257 |
Q |
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| T |
5272061 |
aggtttatctaccttggtgatggtgctggagattattgccctagcttgaggtttaaagagagagactttgtgatgccaaggaagaattt |
5271973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 172 - 257
Target Start/End: Original strand, 5269615 - 5269700
Alignment:
| Q |
172 |
tttatctatcttggggatggtagtggagattattgtccaagcttgaggcttaaagaaaaagactttgtgatgccaaggaagaattt |
257 |
Q |
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| T |
5269615 |
tttatctaccttggtgatggtgctggggactattgccctagcttgaggcttagagaaagagactttgtgatgccaaggaagaattt |
5269700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 160 - 257
Target Start/End: Original strand, 5251759 - 5251856
Alignment:
| Q |
160 |
gagaataaaaggtttatctatcttggggatggtagtggagattattgtccaagcttgaggcttaaagaaaaagactttgtgatgccaaggaagaattt |
257 |
Q |
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| T |
5251759 |
gagaacaagaggtttatctaccttggtgatggcattggagattattgtcctagtttaaggcttagagagaaagatttcatgatgccaaggaagaattt |
5251856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 169 - 257
Target Start/End: Complemental strand, 5276050 - 5275962
Alignment:
| Q |
169 |
aggtttatctatcttggggatggtagtggagattattgtccaagcttgaggcttaaagaaaaagactttgtgatgccaaggaagaattt |
257 |
Q |
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| T |
5276050 |
aggtttatctaccttggtgatggtgcaggggactattgccctagtttgaggcttagagaaagagactttgtgatgccaaggaagaattt |
5275962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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