View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7152_low_1 (Length: 462)
Name: NF7152_low_1
Description: NF7152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7152_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 65 - 445
Target Start/End: Original strand, 10180805 - 10181186
Alignment:
| Q |
65 |
ttcttgtcaaatataaaagagtgtgtaggaagagaattctgccaattatatagatttgttatatttactttactagattgtaaattgagacaaacatctt |
164 |
Q |
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| T |
10180805 |
ttcttgtcaaatataaaagagtgtgtaggaagagaattctgacaattatatagatttgttatatttactttactagattgtaaattgagacaaacatctt |
10180904 |
T |
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| Q |
165 |
agctgataaaatgttcattgttttgggtttctactgctaggtacgaagaagnnnnnnn-ggcagtttctatccatgctaaagtcttgctacgaaaattaa |
263 |
Q |
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| T |
10180905 |
agctgataaaatgtttattgttttgggtttctactgctaggtacgaagaaaaaaaaaaaggcagtttctatccatgctaaagtcttgctacgaaaattaa |
10181004 |
T |
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| Q |
264 |
gaggtggaactatttagaaacaacaagaagctcaaggagcagtttgcaggaaacaattgtaatcctattcttttttgtctttaataattagatagtgcaa |
363 |
Q |
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| T |
10181005 |
gaggtggaactatttagaaacaacaagaagctcaaggagcagtttgcaggaaacaattgtaatcctattctattttgtctttaataattagatagtgcaa |
10181104 |
T |
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| Q |
364 |
ctaacaccaccactattaatactactagtagtactatgaatgatgatcagtggcctgataatttatcaatcaagagaagtag |
445 |
Q |
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| T |
10181105 |
ctaacaccaccactaataatactactagtagtactatgaatgatgatcagtggcctgataatttatcaatcaagagaagtag |
10181186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 116 - 263
Target Start/End: Original strand, 10342215 - 10342362
Alignment:
| Q |
116 |
agatttgttatatttactttactagattgtaaattgagacaaacatctta--gctgataaaatgttcattgttttgggtttctactgctaggtacgaaga |
213 |
Q |
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| T |
10342215 |
agatttgttatatttacttttatagattgtaaattgagacaaacatcttatagcagatataaactttactgttttgggtttctactgctaggtatgaaga |
10342314 |
T |
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| Q |
214 |
agnnnnnnnggcagtttctatccatgctaaagtcttgctacgaaaattaa |
263 |
Q |
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| T |
10342315 |
aaaaaaaac--cagtttctatccatgctaaagtcttgttctgaaaattaa |
10342362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 351 - 440
Target Start/End: Complemental strand, 10343711 - 10343622
Alignment:
| Q |
351 |
ttagatagtgcaactaacaccaccactattaatactactagtagtactatgaatgatgatcagtggcctgataatttatcaatcaagaga |
440 |
Q |
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| T |
10343711 |
ttagatggtggaattaacaccaccactactactagtactagttgtactatgaaggattatcattggcatgataacttatcaatcaagaga |
10343622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 79 - 119
Target Start/End: Original strand, 10180702 - 10180742
Alignment:
| Q |
79 |
aaaagagtgtgtaggaagagaattctgccaattatatagat |
119 |
Q |
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| T |
10180702 |
aaaagagtgtgtaggaagagaattctggcaattatatagat |
10180742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 44
Target Start/End: Original strand, 10180754 - 10180785
Alignment:
| Q |
13 |
aatatgatctacaatacaaatataaaataaga |
44 |
Q |
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| T |
10180754 |
aatatgatctacaatacaaatataaaataaga |
10180785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 445
Target Start/End: Original strand, 10343009 - 10343086
Alignment:
| Q |
368 |
caccaccactattaatactactagtagtactatgaatgatgatcagtggcctgataatttatcaatcaagagaagtag |
445 |
Q |
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| T |
10343009 |
caccactactactattagtagtagttgtactatgaattatgatcagtgacatgataatttattgattaagagaagtag |
10343086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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