View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7152_low_4 (Length: 216)
Name: NF7152_low_4
Description: NF7152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7152_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 3e-96; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 20 - 201
Target Start/End: Original strand, 9299649 - 9299830
Alignment:
| Q |
20 |
atctgtacgttgaaaagacctgaataattacttaaccaaactaacaaactattccaatatgacatttttaaaatctttcactaacaagtttatattacat |
119 |
Q |
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| T |
9299649 |
atctgtacgttgaaaagacctgaataattacttaaccaaactaacaaactattccaatatgacatttttaaaatctttcactaacaagtttatattacat |
9299748 |
T |
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| Q |
120 |
gacaggaatacaaacaagatattaaaacaaaacgataagaataatagcgtatgtctttgtctaggtgttaacacttgttctt |
201 |
Q |
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| T |
9299749 |
gacaggaatacaaacaagatattaaaacaaaacgataagaataatagcgtatgtctttgtctaggtgttaacacctgttctt |
9299830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 41 - 161
Target Start/End: Original strand, 9270918 - 9271038
Alignment:
| Q |
41 |
gaataattacttaaccaaactaacaaactattccaatatgacatttttaaaatctttcactaacaagtttatattacatgacaggaatacaaacaagata |
140 |
Q |
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| T |
9270918 |
gaataattacttaaccaagatgacaaaccacaccaatatgacatttttaaaatctttcactaacaactttacattacttgacataaatacaaacaagatt |
9271017 |
T |
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| Q |
141 |
ttaaaacaaaacgataagaat |
161 |
Q |
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| T |
9271018 |
ttaaaacaaaacgataagaat |
9271038 |
T |
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