View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7153_high_13 (Length: 210)
Name: NF7153_high_13
Description: NF7153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7153_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 22 - 203
Target Start/End: Complemental strand, 4840541 - 4840360
Alignment:
| Q |
22 |
tccgaacccttcaaaccatatgccatcatctcaacttctcactgaaccgtctcatctccactcagaaattcttctcaatagaaccctaacccatcatctc |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
4840541 |
tccgaacccttcaaaccatatgccatcatctcaacttctcactgaaccctctcatctccacccagaaattcttctcaatagaaccctaacccatcatctc |
4840442 |
T |
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| Q |
122 |
atacaaattcattcactgcaccctttgacgaaactgtcgaactaatagaagtcgttttctgcatgctttttcttctcactcg |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
4840441 |
atacaaattcattcactgcaccctttgacgaaactgtcgaactaatagaagtcgttttctgcatgcttttccttctcactcg |
4840360 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 164; Significance: 8e-88; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 20 - 203
Target Start/End: Complemental strand, 14360955 - 14360772
Alignment:
| Q |
20 |
agtccgaacccttcaaaccatatgccatcatctcaacttctcactgaaccgtctcatctccactcagaaattcttctcaatagaaccctaacccatcatc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
14360955 |
agtccgaacccttcaaaccatatgccatcatctcaacttctcactgaaccctctcatctccacccagaaattcttctcaatagaaccctaacccatcatc |
14360856 |
T |
|
| Q |
120 |
tcatacaaattcattcactgcaccctttgacgaaactgtcgaactaatagaagtcgttttctgcatgctttttcttctcactcg |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
14360855 |
tcatacaaattcattcactgcaccctttgacgaaactgacgaactaatagaagtcgttttctgcacgcttttccttctcactcg |
14360772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 20 - 203
Target Start/End: Complemental strand, 13069791 - 13069608
Alignment:
| Q |
20 |
agtccgaacccttcaaaccatatgccatcatctcaacttctcactgaaccgtctcatctccactcagaaattcttctcaatagaaccctaacccatcatc |
119 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
13069791 |
agtccgaacccttcaaaccatatgccatcatctcaacttctcactgaaccctctcatctccacccagaaattcttctcaatagaaccctaacccatcatc |
13069692 |
T |
|
| Q |
120 |
tcatacaaattcattcactgcaccctttgacgaaactgtcgaactaatagaagtcgttttctgcatgctttttcttctcactcg |
203 |
Q |
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|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
13069691 |
tcatacgaattcattcactgcaccctttgatgaaactgtcgaactaatagaagtcgttttctgcacgcttttccttctcactcg |
13069608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 20 - 203
Target Start/End: Original strand, 28157354 - 28157537
Alignment:
| Q |
20 |
agtccgaacccttcaaaccatatgccatcatctcaacttctcactgaaccgtctcatctccactcagaaattcttctcaatagaaccctaacccatcatc |
119 |
Q |
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|
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
28157354 |
agtccgaacccttcaaaccatatgtcatcatctcaacttctcactgaaccctctcatctccacccagaaattcttctcaatagaaccctaacccatcatc |
28157453 |
T |
|
| Q |
120 |
tcatacaaattcattcactgcaccctttgacgaaactgtcgaactaatagaagtcgttttctgcatgctttttcttctcactcg |
203 |
Q |
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|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
28157454 |
tcatacgaattcattcactgcaccctttgatgaaactgtcgaactaatagaagtcgttttctgcacgcttttccttctcactcg |
28157537 |
T |
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