View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7153_high_14 (Length: 207)

Name: NF7153_high_14
Description: NF7153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7153_high_14
NF7153_high_14
[»] chr7 (2 HSPs)
chr7 (50-130)||(8027802-8027882)
chr7 (127-191)||(8027376-8027440)
[»] chr2 (1 HSPs)
chr2 (127-171)||(24125069-24125113)
[»] scaffold0063 (1 HSPs)
scaffold0063 (135-171)||(68558-68594)


Alignment Details
Target: chr7 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 50 - 130
Target Start/End: Complemental strand, 8027882 - 8027802
Alignment:
Q  50 tctgtaacattcattattttgtccatatggagttgaggttttatgtattcaatttatgcttagatctgcttctgttatgat 130  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||||| ||||| |||||||||||||||||| |||||||    
T  8027882 tctgtaacattcattattttgtccatatgaagttgagtttttatgtatccaattgatgcttagatctgcttctattatgat 8027802  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 8027440 - 8027376
Alignment:
Q  127 tgatttcaaccgtaattataatatgatatactcactaataaatgattttataaattgcacaggtt 191  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  8027440 tgatttcaacggtaattataatatgatatactcactaatagatgattttacaaattgcacaggtt 8027376  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 171
Target Start/End: Original strand, 24125069 - 24125113
Alignment:
Q  127 tgatttcaaccgtaattataatatgatatactcactaataaatga 171  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||    
T  24125069 tgatttcaaccgtaattataatattatatactcactaatagatga 24125113  T

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Target: scaffold0063 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 68594 - 68558
Alignment:
Q  135 accgtaattataatatgatatactcactaataaatga 171  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  68594 accgtaattataatatgatatacccactaatagatga 68558  T

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