View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7153_high_2 (Length: 444)
Name: NF7153_high_2
Description: NF7153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7153_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 16 - 426
Target Start/End: Complemental strand, 34580388 - 34579980
Alignment:
| Q |
16 |
atatatatcaaatccatttggttagaaatcattctgcatgctcaattcaccaagtaagctagctgcttgtaacagctatatatgtataaaattatacaaa |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34580388 |
atatatatcaaatccatttggttagaaatcattctgcatactcagttcaccaagtaagctagctgcttgtaacagctatatatgtataaaattatgcaaa |
34580289 |
T |
|
| Q |
116 |
cattatatcacatgagaattacttattgtaattaacatgaaaaattcaccaagttgctttaaagatacttcaatcaacccaaaatatcggaactactcag |
215 |
Q |
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| T |
34580288 |
cattataccacatgagaattacttattgtaattaatatggaaaattcaccaagttgctttaaagatacttcaatcaacccaaaatatcgga---actcag |
34580192 |
T |
|
| Q |
216 |
atcagtaaaacaagaatattgacctgacattatgagctacttgctctaaaaggacaaattggaacatagcaaggaaataaataaataaa-ggtcttacta |
314 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
34580191 |
atcagtaaaacaagaatattgacctgacattatgagcaacttgctctaaaaggacaaattggaacatagcaaggaaataaataaataaagggtcctacta |
34580092 |
T |
|
| Q |
315 |
accgatgtctctgaaacactgattaaagtagtagaaaaacaagttttaagttgaaacaacatgttttatacgtttgaggaattgattacacaaacttcaa |
414 |
Q |
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| T |
34580091 |
accagtatctctgaaacactaattaaggtagtagaaaaacacgttttaagttgaaacaatattttttacacgtttgaggaattgattacacaaacttcaa |
34579992 |
T |
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| Q |
415 |
tacaatactatt |
426 |
Q |
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| T |
34579991 |
tacaatactatt |
34579980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 349 - 426
Target Start/End: Complemental strand, 41143890 - 41143812
Alignment:
| Q |
349 |
aaaaacaagttttaagttgaa-acaacatgttttatacgtttgaggaattgattacacaaacttcaatacaatactatt |
426 |
Q |
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|||| |||||||||||||||| ||||| | ||||| || ||||||||||||||||||||| | ||||||||||||||| |
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| T |
41143890 |
aaaagcaagttttaagttgaagacaacgttttttacacttttgaggaattgattacacaagttccaatacaatactatt |
41143812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 426
Target Start/End: Original strand, 41128795 - 41128873
Alignment:
| Q |
349 |
aaaaacaagttttaagttgaa-acaacatgttttatacgtttgaggaattgattacacaaacttcaatacaatactatt |
426 |
Q |
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||||||||||||| ||||||| ||||| | ||||| || ||||||||||||||||||||| | ||||| ||||||||| |
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| T |
41128795 |
aaaaacaagttttcagttgaagacaacgttttttacacttttgaggaattgattacacaagttccaatataatactatt |
41128873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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