View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7153_high_3 (Length: 427)
Name: NF7153_high_3
Description: NF7153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7153_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 20 - 412
Target Start/End: Original strand, 30637947 - 30638339
Alignment:
| Q |
20 |
ctacgcattcgtaatttcccttgtttacaaatggagaaatgatccacaaatattgtgtgttggtaagcattttcaaagtgaaggattatagtgcttcaaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30637947 |
ctacgcattcgtaatttcccttgtttgcaaatggagaaatgatccacaaatattgtgtgttggtaagcattttcaaagtgaaggattatagtgcttcaaa |
30638046 |
T |
|
| Q |
120 |
gttcgtcatggtttaatcaccgaaagcaagtaattgaagaaagaaccgaaaacaaagagactattgctctagtgtttcaaatcttgaccactattataac |
219 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30638047 |
gttcgtcatggtttaatcaccgaaagcaaataattgaagaaagaatcgaaaacaaagagactattgctctagtgtttcaaatcttgaccactattataac |
30638146 |
T |
|
| Q |
220 |
agacttgagttatttaatgttattatttctaaatataccctttatttatgaacataatttttccaaaaagacaatttagtaaatttcaagtgtgttttac |
319 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30638147 |
atacttgagttatttaatgttattatttctaaatataccctttatttatgaacataatttttccaaaaagacaatttagtaaatttcaagtgtgttttac |
30638246 |
T |
|
| Q |
320 |
aacaccctatatcctttagaaagtcaataaaatctggtagagtttccaaagcataattttgaagattgccaatgatattcaactaatattcat |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30638247 |
aacaccctatatcctttagaaagtcaataaaatctggtagagcttccaaagcataattttgaagattgccaatgatattcaactaatattcat |
30638339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University