View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7153_high_9 (Length: 282)

Name: NF7153_high_9
Description: NF7153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7153_high_9
NF7153_high_9
[»] chr7 (2 HSPs)
chr7 (147-252)||(37146508-37146612)
chr7 (1-140)||(37147113-37147244)
[»] chr1 (2 HSPs)
chr1 (53-139)||(46627652-46627738)
chr1 (67-140)||(46621971-46622044)
[»] chr6 (4 HSPs)
chr6 (148-253)||(28005627-28005732)
chr6 (148-266)||(144396-144514)
chr6 (148-266)||(152417-152535)
chr6 (202-266)||(27924662-27924726)
[»] chr2 (1 HSPs)
chr2 (148-264)||(24326582-24326698)


Alignment Details
Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 147 - 252
Target Start/End: Complemental strand, 37146612 - 37146508
Alignment:
Q  147 attgagttgcgactaaaataaccaatctaattgtgtcatgtgtatacactggagcaaatacctcttcataatcaaccccatattcttgcttatagcctta 246  Q
    |||||||||||||| |||||||||||||| ||||||||||| ||| ||| | |||||||||||||| ||||||||||||||||||||||||||||||||     
T  37146612 attgagttgcgactgaaataaccaatcta-ttgtgtcatgtctatccaccgtagcaaatacctctttataatcaaccccatattcttgcttatagccttt 37146514  T
Q  247 aactac 252  Q
    ||||||    
T  37146513 aactac 37146508  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 37147244 - 37147113
Alignment:
Q  1 ctaactcctacccatatatatctgatgctatggtagagcaacatgagtatgaataggcttttgaggaatgccatttgtataagggtgcataagactcctc 100  Q
    |||||||||||| |||||||||| |||||||||||||| |  |     ||  |||||||||||||||||  ||||||    |||||||| |||||||||     
T  37147244 ctaactcctaccaatatatatctaatgctatggtagaggacgac----atatataggcttttgaggaattacatttg----agggtgcaaaagactccta 37147153  T
Q  101 caaagttcattttaattgtattccatctcacaatttacat 140  Q
    |||||||||||||||||||||||||| ||| |||||||||    
T  37147152 caaagttcattttaattgtattccatttcataatttacat 37147113  T

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Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 53 - 139
Target Start/End: Original strand, 46627652 - 46627738
Alignment:
Q  53 ataggcttttgaggaatgccatttgtataagggtgcataagactcctccaaagttcattttaattgtattccatctcacaatttaca 139  Q
    |||| ||||||| ||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  46627652 atagacttttgaagaatgacatttgtataaggttgcagaagactcctccaaagttcattttaattgtattccatttcacaatttaca 46627738  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 67 - 140
Target Start/End: Original strand, 46621971 - 46622044
Alignment:
Q  67 aatgccatttgtataagggtgcataagactcctccaaagttcattttaattgtattccatctcacaatttacat 140  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  46621971 aatgacatttgtataagggtgcagaagactcctccaaagttcattttgattgtattccatttcacaatttacat 46622044  T

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Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 148 - 253
Target Start/End: Complemental strand, 28005732 - 28005627
Alignment:
Q  148 ttgagttgcgactaaaataaccaatctaattgtgtcatgtgtatacactggagcaaatacctcttcataatcaaccccatattcttgcttatagccttaa 247  Q
    |||||||||| || ||||||||||| ||||||||||| || ||  ||| |||||| ||||||||| ||| |||||||||||||||||||||||||||| |    
T  28005732 ttgagttgcggctgaaataaccaatataattgtgtcaagtatagccaccggagcatatacctctttatagtcaaccccatattcttgcttatagccttta 28005633  T
Q  248 actacc 253  Q
    ||||||    
T  28005632 actacc 28005627  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 148 - 266
Target Start/End: Complemental strand, 144514 - 144396
Alignment:
Q  148 ttgagttgcgactaaaataaccaatctaattgtgtcatgtgtatacactggagcaaatacctcttcataatcaaccccatattcttgcttatagccttaa 247  Q
    ||||| ||||||| ||||||||||||||||||||||| |   |  |||  ||||||||||||||| |||||| ||||| ||||| ||||||||||||| |    
T  144514 ttgagctgcgactgaaataaccaatctaattgtgtcaaggcgagccaccagagcaaatacctctttataatcgaccccgtattcctgcttatagccttta 144415  T
Q  248 actaccggtcaagccttgt 266  Q
    |||||  ||| ||||||||    
T  144414 actactagtcgagccttgt 144396  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 148 - 266
Target Start/End: Complemental strand, 152535 - 152417
Alignment:
Q  148 ttgagttgcgactaaaataaccaatctaattgtgtcatgtgtatacactggagcaaatacctcttcataatcaaccccatattcttgcttatagccttaa 247  Q
    ||||| ||||||| ||||||||||||||||||||||| |   |  |||  ||||||||||||||| |||||| ||||| ||||| ||||||||||||| |    
T  152535 ttgagctgcgactgaaataaccaatctaattgtgtcaaggcgagccaccagagcaaatacctctttataatcgaccccgtattcctgcttatagccttta 152436  T
Q  248 actaccggtcaagccttgt 266  Q
    |||||  ||| ||||||||    
T  152435 actactagtcgagccttgt 152417  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 202 - 266
Target Start/End: Complemental strand, 27924726 - 27924662
Alignment:
Q  202 aaatacctcttcataatcaaccccatattcttgcttatagccttaaactaccggtcaagccttgt 266  Q
    ||||| ||||| ||||||||||||||| |||||||||||||||| ||||||| | | ||||||||    
T  27924726 aaataactctttataatcaaccccatactcttgcttatagcctttaactaccagcctagccttgt 27924662  T

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Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 148 - 264
Target Start/End: Complemental strand, 24326698 - 24326582
Alignment:
Q  148 ttgagttgcgactaaaataaccaatctaattgtgtcatgtgtatacactggagcaaatacctcttcataatcaaccccatattcttgcttatagccttaa 247  Q
    ||||| ||||||| ||||||||||||||||||||||| |   |  ||| |||||||||||||||| |||||| ||||| ||||| |||||||| |||| |    
T  24326698 ttgagctgcgactgaaataaccaatctaattgtgtcaaggcgagccaccggagcaaatacctctttataatcgaccccgtattcctgcttatacccttta 24326599  T
Q  248 actaccggtcaagcctt 264  Q
    |||||| ||| ||||||    
T  24326598 actaccagtcgagcctt 24326582  T

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