View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7153_low_1 (Length: 609)
Name: NF7153_low_1
Description: NF7153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7153_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 1 - 595
Target Start/End: Original strand, 28948957 - 28949552
Alignment:
| Q |
1 |
cttgttcctgttgtgtatgctttagatggcctgtgaaaaaagtgccggatctgtccatcnnnnnnnacacctgcatgtttcatataaagtgagacttctc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
28948957 |
cttgttcctgttgtgtatgctttagatggcctgtgaaaaaagtgccggatctgtccatctttttttacacctgcatgtttcatataaagtgagacttctc |
28949056 |
T |
|
| Q |
101 |
actgccataacattagattaaaccaatttgtttagatctaaacccgtgtcttaacccgatcacagagacaaccaaaatgatcccaaaacaagttgttaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28949057 |
actgccataacattagattaaaccaatttgtttagatctaaacccgtgtcttaacccgatcacagagacaaccaaaatgatcccaaaacaagttgttaaa |
28949156 |
T |
|
| Q |
201 |
tagtaatgcatgaacatttattttatttggaaataaatttaactaacatgtaactaagaatttaaaatcaagaaacaaatcatttataacaaagaaacag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28949157 |
tagtaatgcatgaacatttattttatttggaaataaatttaactaacatgtaactaagaatttaaaatcaagaaacaaatcatttataacaaagaaacag |
28949256 |
T |
|
| Q |
301 |
aaaacaaagtttcataaaaatcagaattagcacgagaaagtgaaagtgtaagacannnnnnnnggagagataattagtnnnnnnncacatatgtcctttt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
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| T |
28949257 |
aaaacaaagtttcataaaaatcagaattagcacgagaaagtgaaagtgtaagacattttttttggagagataattagtaaaaaaacacatatgtcctttt |
28949356 |
T |
|
| Q |
401 |
aatattttggaacgggccagttaacctgagggttaatccgagtctgtgtttttatctctattatggtctctaa-nnnnnnnnnnnnnnnnnggattcgga |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
28949357 |
aatattttggaacgggccagttaacctgagggttaatccgagtctgtgtttttatctctattatggtctctaattttttttttttttttttggattcgga |
28949456 |
T |
|
| Q |
500 |
tcggtcccaatccaaaagcttaagtgtcggccggatcaagttttgtaacccaaaacatacggaaaagagatttagctaacacaagtactatgatgt |
595 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28949457 |
tcggtcccaatccaaaagcttaagtgtcggccggatcaagttttgtaacccaaaacatacggaaaagagatttagctaacacaagtactatgatgt |
28949552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 136; Significance: 1e-70; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 176 - 355
Target Start/End: Original strand, 34830510 - 34830686
Alignment:
| Q |
176 |
aatgatcccaaaacaagttgttaaatagtaatgcatgaacatttattttatttggaaataaatttaactaacatgtaactaagaatttaaaatcaagaaa |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34830510 |
aatgatcccaaaacaagttgttaaatagtaatacatgaccattt----tatttggaaataaatttaactaacatgtaactaagaatttaaaatcaagaaa |
34830605 |
T |
|
| Q |
276 |
caaatcatttataacaaagaaacagaaaacaaagtttcat-aaaaatcagaattagcacgagaaagtgaaagtgtaagaca |
355 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34830606 |
caaatcatttaaaacaaagaaacagaaaatgaagtttcataaaaaatcagaattagcacgagaaagtgaaagtgtaagaca |
34830686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 491 - 586
Target Start/End: Original strand, 34830848 - 34830951
Alignment:
| Q |
491 |
ggattcggatcggtcccaatccaaaagcttaagtgtcggccggatcaagttttgtaa--------cccaaaacatacggaaaagagatttagctaacaca |
582 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||| |
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|
| T |
34830848 |
ggattcggatcagtcccaatccaaaagtttaagtgtcggccggatcaggttttgtaacaccactgccgaaaacatacggaaaagagatttagctaacaca |
34830947 |
T |
|
| Q |
583 |
agta |
586 |
Q |
| |
|
|||| |
|
|
| T |
34830948 |
agta |
34830951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 34830102 - 34830160
Alignment:
| Q |
1 |
cttgttcctgttgtgtatgctttagatggcctgtgaaaaaagtgccggatctgtccatc |
59 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
34830102 |
cttgttcctgttgtgtatgctttagatggcctgtgaaagaagtgccggatctgtccatc |
34830160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 107 - 164
Target Start/End: Original strand, 34830422 - 34830479
Alignment:
| Q |
107 |
ataacattagattaaaccaatttgtttagatctaaacccgtgtcttaacccgatcaca |
164 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
34830422 |
ataacattagactaaaccaatttgtttagatctaaacccgtctcttaacccgatcaca |
34830479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 398 - 462
Target Start/End: Original strand, 34830774 - 34830837
Alignment:
| Q |
398 |
tttaatattttggaacgggccagttaacctgagggttaatccgagtctgtgtttttatctctatt |
462 |
Q |
| |
|
||||||||||||||||||| || ||||| |||||| || ||||||| ||| ||||||||||||| |
|
|
| T |
34830774 |
tttaatattttggaacgggttaggtaacccgagggtcaacccgagtccgtg-ttttatctctatt |
34830837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 38886924 - 38886866
Alignment:
| Q |
1 |
cttgttcctgttgtgtatgctttagatggcctgtgaaaaaagtgccggatctgtccatc |
59 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| || || |||||| ||||||| |
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|
| T |
38886924 |
cttgttcctgttgtgtatgcttttgatggcctgtgaaagaaatgtcggatcagtccatc |
38886866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 4235635 - 4235592
Alignment:
| Q |
1 |
cttgttcctgttgtgtatgctttagatggcctgtgaaaaaagtg |
44 |
Q |
| |
|
||||||||||||||||||||||| || ||||| ||||||||||| |
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|
| T |
4235635 |
cttgttcctgttgtgtatgcttttgaaggcctatgaaaaaagtg |
4235592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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