View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7153_low_2 (Length: 465)
Name: NF7153_low_2
Description: NF7153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7153_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 425; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 11 - 447
Target Start/End: Original strand, 8819783 - 8820219
Alignment:
| Q |
11 |
cagagagtgatccagaaagaatgcgtccaaagaaaccccaaatgcttatgaatgaaatgaacaaagaaacatcatggtaaccaagtgcctgtcccatttg |
110 |
Q |
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| T |
8819783 |
cagagagtgatccagaaagaatgcgtccaaagaaaccccaaatgcttatgaatgaaatgaacaaagaaacatcatggtaaccaagtgcctgtcccatttg |
8819882 |
T |
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| Q |
111 |
tcccatgttattcatcacacatagtcctgttcccacaccacatagaaatgatacaaacaaaacccaaaaatcaatagttttaaccatttcaatgattgta |
210 |
Q |
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| T |
8819883 |
tcccaagttattcatcacacatagtcctgttcccacaccacatagaaatgatacaaacaaaacccaaaaatcaatagttttaaccatttcaatgattgta |
8819982 |
T |
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| Q |
211 |
tgctcttcacctatcaccggttttcttttaatctcaacttcctctaccttggtgtgtgtctcttccttttcttctgaaaccttttgtgccaacaaaggtt |
310 |
Q |
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| T |
8819983 |
tgctcttcacctatcaccggttttcttttaatctcaacttcctcttccttggtgcgtgtctcttccttttcttctgaaaccttttgtgccaacaaaggtt |
8820082 |
T |
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| Q |
311 |
catgaacctctttttctttgtcaacactaggcctagttttgaatacgaccaaatataaaggaacaagaagtggcatagctaataggatcaaaagtcctac |
410 |
Q |
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| T |
8820083 |
catgaacctctttttctttgtcaacactaggcctagttttgaatacgaccaaatataaaggaacaagaagtggcatagctaataggatcaaaagtcctac |
8820182 |
T |
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| Q |
411 |
tgtgaaaaccaatgaaataacatgtttatgaggtcca |
447 |
Q |
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| T |
8820183 |
tgtgaaaaccaatgaaataacatgtttatgaggtcca |
8820219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 22 - 98
Target Start/End: Original strand, 8818442 - 8818518
Alignment:
| Q |
22 |
ccagaaagaatgcgtccaaagaaaccccaaatgcttatgaatgaaatgaacaaagaaacatcatggtaaccaagtgc |
98 |
Q |
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| T |
8818442 |
ccagaaagaatgcgcccaaagaaatcccaaatgctaatcaaagaaatgaacaaagaaacaccatggtaaccaagtgc |
8818518 |
T |
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