View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7153_low_6 (Length: 352)
Name: NF7153_low_6
Description: NF7153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7153_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 28948962 - 28948626
Alignment:
| Q |
1 |
aacaaggaaaagaagaaaggttcaaactgatgaagaaggaagtgaaacaagatggcacaaaacagggaaaactagaccagttattattgatggtgttatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28948962 |
aacaaggaaaagaagaaaggttcaaactgatgaagaaggaagtgaaacaagatggcacaaaacagggaaaactagaccagttattattgatggtgttatg |
28948863 |
T |
|
| Q |
101 |
aaaggtttcaagaagatactagtcctctacaccaactatggaaggcaaaagaagcctgagaagaccaattgggtgatgcatcaataccaccttggtagta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28948862 |
aaaggtttcaagaagatactagtcctctacaccaactatggaaggcaaaagaagcctgagaagaccaattgggtgatgcatcaataccaccttggtagta |
28948763 |
T |
|
| Q |
201 |
atgaagaagagaaagatggtgaattagttgtttcaaagaagatactagaatatctctcgtccagtgagcgacgattagcttgcaattcagtaatacggtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28948762 |
atgaagaagagaaagatggtgaattagttgtttcaaagaagatactagaatatctctcgtccagtgagcgacgattagcttgcaattcagtaatacggtt |
28948663 |
T |
|
| Q |
301 |
catgtattcatcagttaatttcttcttatcgttgatg |
337 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
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| T |
28948662 |
catgtattcatcagttaatttcttcttatcgttgatg |
28948626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 43015191 - 43015272
Alignment:
| Q |
158 |
gagaagaccaattgggtgatgcatcaataccaccttggtagtaatgaagaagagaaagatggtgaattagttgtttcaaaga |
239 |
Q |
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|||||||| ||||||||||||||||||||||| ||||| |||||||||||||||| || || | ||||||||||||| |
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| T |
43015191 |
gagaagacgaattgggtgatgcatcaataccatcttggacaacatgaagaagagaaagaaggagagcttgttgtttcaaaga |
43015272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 34830107 - 34829870
Alignment:
| Q |
1 |
aacaaggaaaagaagaaaggttcaaactgatgaagaaggaagtgaaacaagatggcacaaaacagggaaaactagaccagttattattgatggtgttatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
34830107 |
aacaaggaaaagaagaaaggttcaaactgatgaagaaggaagtgaaacaagatggcacaaaacagggaaaactagaccagttattattgaaggtgttatg |
34830008 |
T |
|
| Q |
101 |
aaaggtttcaagaagatactagtcctctacaccaactatggaaggcaaaagaagcctgagaagaccaattgggtgatgcatcaataccaccttggtagta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34830007 |
aaaggtttcaagaagatactagtcctctacaccaactatggaaggcaaaagaagcctgagaagaccaattgggtgatgcatcaataccaccttggtagta |
34829908 |
T |
|
| Q |
201 |
atgaagaagagaaagatggtgaattagttgtttcaaag |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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|
| T |
34829907 |
atgaagaagagaaagatggtgaattagttgtttcaaag |
34829870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 245 - 337
Target Start/End: Complemental strand, 34814073 - 34813981
Alignment:
| Q |
245 |
ctagaatatctctcgtccagtgagcgacgattagcttgcaattcagtaatacggttcatgtattcatcagttaatttcttcttatcgttgatg |
337 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34814073 |
ctagaatatctctcgtccagtgagcgacgattagcttgcaattcagtaatacggttcatgtattcatcagttaatttcttcttatcgttgatg |
34813981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 128 - 216
Target Start/End: Original strand, 30505888 - 30505976
Alignment:
| Q |
128 |
tacaccaactatggaaggcaaaagaagcctgagaagaccaattgggtgatgcatcaataccaccttggtagtaatgaagaagagaaaga |
216 |
Q |
| |
|
||||| |||||||||| |||| ||||| ||||| || ||||||||||||||||| || || ||||| ||| |||||||||||||||| |
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|
| T |
30505888 |
tacacaaactatggaaaacaaagaaagccagagaaaacaaattgggtgatgcatcagtatcatcttgggagtgatgaagaagagaaaga |
30505976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 4235630 - 4235868
Alignment:
| Q |
1 |
aacaaggaaaagaagaaaggttcaaactgatgaagaaggaagtgaaacaagatggcacaaaacagggaaaactagaccagttattattgatggtgttatg |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| || || || |||||||| || |
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| T |
4235630 |
aacaaggaaaagaagaaaggttcacactgatgaagaaggaattgaaacaagatggcacaaaacagggaaaactagagcaattttttccaatggtgttgtg |
4235729 |
T |
|
| Q |
101 |
aaaggtttcaagaagatactagtcctctacaccaactatggaaggcaaaagaagcctgagaagaccaattgggtgatgcatcaataccaccttggtagta |
200 |
Q |
| |
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|| || || ||||||||| | || ||||||||||||||| | | | || || |||||||| ||||||||||||||||||||||| ||||||| | |
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| T |
4235730 |
aagggatttaagaagatattggtactctacaccaactattgcaaagatggaaaaccagagaagactaattgggtgatgcatcaataccatcttggtatga |
4235829 |
T |
|
| Q |
201 |
atgaagaagagaaagatggtgaattagttgtttcaaaga |
239 |
Q |
| |
|
|||||||||| | |||||| ||||| |||| |||||||| |
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|
| T |
4235830 |
atgaagaagaaagagatggagaattcgttgcttcaaaga |
4235868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 4242642 - 4242696
Alignment:
| Q |
1 |
aacaaggaaaagaagaaaggttcaaactgatgaagaaggaagtgaaacaagatgg |
55 |
Q |
| |
|
|||||||| ||||||||||||||| || ||||||||||| |||||||||||||| |
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|
| T |
4242642 |
aacaaggacaagaagaaaggttcacaccaatgaagaaggatgtgaaacaagatgg |
4242696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 38886919 - 38887000
Alignment:
| Q |
1 |
aacaaggaaaagaagaaaggttcaaactgatgaagaaggaagtgaaacaagatggcacaaaacagggaaaactagaccagtt |
82 |
Q |
| |
|
|||||| ||||||||||| || || || |||| || |||||||| |||||||||||||||||||| ||||| || |||||| |
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|
| T |
38886919 |
aacaagaaaaagaagaaaagtgcacacagatgctgatggaagtgagacaagatggcacaaaacaggtaaaacaaggccagtt |
38887000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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