View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7155_high_1 (Length: 640)
Name: NF7155_high_1
Description: NF7155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7155_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 440; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 118 - 632
Target Start/End: Complemental strand, 32250458 - 32249947
Alignment:
| Q |
118 |
taactatatttgacgtgatttgattggatgcatgagtaaaaatgttttaacctttgagttaggttgtttctggtgtgaaggcttcagtttgataataacc |
217 |
Q |
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||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32250458 |
taactatatttgacgcgatttgattggatgcatgagtaacaatgttttaacctttgagttaggttgtttctggtgtgaaggcttcagtttgataataacc |
32250359 |
T |
|
| Q |
218 |
aagagaggtactataagctagaatttctactttaattactccatacatctatatatttgagtctgagcaacactgttatggcttaatgaaaactgtaaat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
32250358 |
aagagaggtactataagctagaatttctactttaattactccatacatctatatatttgagtctgagcaacactgttacggcttaatgaaaactgtaaat |
32250259 |
T |
|
| Q |
318 |
gaataaagtagagtgaaaaagaagtaatgatatcaacatgtaaagaatcgacgcagaatgcatgggaccatcccatgccatatacatttgttctcattca |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
32250258 |
gaataaagtagagtgaaaaagaagtaatgatatcaacatgtaaagaatcgacgcagaatgcatgggaccatcccatgccatatatatttgttctcattca |
32250159 |
T |
|
| Q |
418 |
tttaactgcagtcatgattccatatgtaaagataccaacaaatatacactctgtgatgtctctgtgcacatatatatcttaatgtgatgtgtaggaaatt |
517 |
Q |
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|||||||||||||| |||||||||||| |||||| |||||||||||| |||||||||||||| ||||||||| |||| ||||||||||||||||||||| |
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| T |
32250158 |
tttaactgcagtcaggattccatatgtgaagatagcaacaaatataccctctgtgatgtctc--tgcacatatctatcataatgtgatgtgtaggaaatt |
32250061 |
T |
|
| Q |
518 |
aagaatttataggcatgcatgctgaagaatgtcatgaactcagcaacctacactgtgtgacgtgtcccttcctcactcttctcttcttactataaatcac |
617 |
Q |
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||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
32250060 |
aagaattcataggcatgcatggtgaagaatgtcatgaact-agcaacctacactgtgtgacgtgtccctttctcacgcttctcttcttactataaatcac |
32249962 |
T |
|
| Q |
618 |
cactccacaggttct |
632 |
Q |
| |
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||||||||||||||| |
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| T |
32249961 |
cactccacaggttct |
32249947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 144 - 632
Target Start/End: Complemental strand, 32244723 - 32244238
Alignment:
| Q |
144 |
gatgcatgagtaaaaatgttttaacctttgagttaggttgtttctggtgtgaaggcttcagtttgataataaccaagagaggtactat-aagctagaatt |
242 |
Q |
| |
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||||||||||||||||||||||| ||| ||||| | |||||||| || ||||||| ||| ||||||||||| |||||||||||||| ||||||||||| |
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| T |
32244723 |
gatgcatgagtaaaaatgttttacgctta-agttatgctgtttctgttgcgaaggctacagattgataataacaaagagaggtactattaagctagaatt |
32244625 |
T |
|
| Q |
243 |
tctactttaattactccatacatctatatatttgagtctgagcaacactgttatggcttaatgaaaactgtaaatgaataaagtagagtgaaaaagaagt |
342 |
Q |
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||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
32244624 |
tctactttaatcactacatacatctatatatttgagtctgagcaacactgttactgcttaatgaaaactgtaaatgaattaagtaaagtgaaaaagaagt |
32244525 |
T |
|
| Q |
343 |
aatgatatcaacatgtaaagaatcgacgcagaatgcatgggaccatcccatgccatatacatttgttctcattcatttaactgcagtcatgattccatat |
442 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32244524 |
aatgatatcaacatgtaaagaatcgacgcagaatgcatgggaccatcccatgccatatacatttgttctcattcatttaactgcagtcatgattccatat |
32244425 |
T |
|
| Q |
443 |
gtaaagataccaacaaatatacactctgtgatgtctctgtgcacatatatatcttaatgtgatgtgtaggaaattaagaatttataggcatgcatgctga |
542 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
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| T |
32244424 |
gtaaagataccaacaaatatacactctgtgatgtctctgtgcacat--atatcttaatgtgatgtgtaggaaattaagaattcataggcatgcatggtga |
32244327 |
T |
|
| Q |
543 |
agaatgtcatgaactcagcaacctacactgtgtgacgtgtcccttcctcactcttctcttcttactataaatcaccactccacaggttct |
632 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32244326 |
agaatgtcatgaact-agcaacctacactgtgtgacgtgtcccttcctcactcttctcttcttactataaatcaccactccacaggttct |
32244238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 487 - 632
Target Start/End: Complemental strand, 32254912 - 32254767
Alignment:
| Q |
487 |
atatatatcttaatgtgatgtgtaggaaattaagaatttataggcatgcatgctgaagaatgtcatgaactcagcaacctacactgtgtgacgtgtccct |
586 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
32254912 |
atatatataataatgtgatgtgtaggaaattaagaattcataggcatgcatggtgaagaatgtcatgaacttagcaacctacactgtgtgacgtgtccct |
32254813 |
T |
|
| Q |
587 |
tcctcactcttctcttcttactataaatcaccactccacaggttct |
632 |
Q |
| |
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| ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
32254812 |
ttctcacgcttctcttcttactataaatcaccactccacaggttct |
32254767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 32246774 - 32246881
Alignment:
| Q |
18 |
catagtagagtgg-caaatgagcactagcgttaactgaactttcattgacttttgtttcgttaaaagcaatgaaagccaaagtaattgttgatttcttag |
116 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
32246774 |
catagtagagtgggcaaatgagcactagcgttaactgaactttcattgacttttgtttcgttaaaagcaatgaaagccaaagtaattgttgatttctttg |
32246873 |
T |
|
| Q |
117 |
ctaactat |
124 |
Q |
| |
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|||||||| |
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|
| T |
32246874 |
ctaactat |
32246881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 32251851 - 32251958
Alignment:
| Q |
18 |
catagtagagtgg-caaatgagcactagcgttaactgaactttcattgacttttgtttcgttaaaagcaatgaaagccaaagtaattgttgatttcttag |
116 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
32251851 |
catagtagagtgggcaaaggagcactagcgttaactgaaccttcattgacttatgtttcgttaaaagcaatgaaagccaaaataattgttgatttcttag |
32251950 |
T |
|
| Q |
117 |
ctaactat |
124 |
Q |
| |
|
|||||||| |
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|
| T |
32251951 |
ctaactat |
32251958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 25976853 - 25976746
Alignment:
| Q |
18 |
catagtagagtgg-caaatgagcactagcgttaactgaactttcattgacttttgtttcgttaaaagcaatgaaagccaaagtaattgttgatttcttag |
116 |
Q |
| |
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||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||| |
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| T |
25976853 |
catagtagagtgggcaaatgagcactagttttaactgaactttcattgacttatgtttcgctaaaagcaatgaaagccaaagtaatttttgatttcttag |
25976754 |
T |
|
| Q |
117 |
ctaactat |
124 |
Q |
| |
|
|||||||| |
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|
| T |
25976753 |
ctaactat |
25976746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 132 - 166
Target Start/End: Complemental strand, 1635030 - 1634996
Alignment:
| Q |
132 |
gtgatttgattggatgcatgagtaaaaatgtttta |
166 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |
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| T |
1635030 |
gtgatttgattggatgcatgtgtaaaaatgtttta |
1634996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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