View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7155_low_2 (Length: 363)
Name: NF7155_low_2
Description: NF7155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7155_low_2 |
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| [»] scaffold0147 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 11 - 349
Target Start/End: Original strand, 43879006 - 43879341
Alignment:
| Q |
11 |
agaatatggagtgaaagagaaaaaagacaaagggaataagaagaatgattcatgtgttaatgaattggcattgaagatgaaggaattggagatgaatgat |
110 |
Q |
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| T |
43879006 |
agaaaatggagtgaaagagaaaaaagacaaagggaataagaagaatgattcatgtgttaatgaattggcattgaagatgaaggaattggagatgaatgat |
43879105 |
T |
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| Q |
111 |
tcaggtgatgttgaacaagtactagatatagaagaagcacttcactattattctcgtctcaagagtcctatttatttagatattgtcgacaagtttttca |
210 |
Q |
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| T |
43879106 |
tcaggtgatgttgaacaagtactagatatagaagaagcacttcactattattctcgtctcaagagtcctatttatttagatattgtcgacaagtttttca |
43879205 |
T |
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| Q |
211 |
ctgacatgcactcagaattgtctgtttcacaatcctctgtcagcatcaaacgatcaaagtcaaagggaagatttggatcaatcaggttgtagataataat |
310 |
Q |
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| T |
43879206 |
ctgacatgcactcagaattgtctgtttcacaatcctctgtcagcatcaaacgatcaaagtcaaagggaagatttggatcaatcaggttgtag---ataat |
43879302 |
T |
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| Q |
311 |
ataaatcttaattcttgtggtgtatatgaatgaaatctg |
349 |
Q |
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| T |
43879303 |
ataaatcttaattcttgtggtgtatatgaatgaaatctg |
43879341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 83 - 210
Target Start/End: Complemental strand, 7701 - 7574
Alignment:
| Q |
83 |
gaagatgaaggaattggagatgaatgattcaggtgatgttgaacaagtactagatatagaagaagcacttcactattattctcgtctcaagagtcctatt |
182 |
Q |
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| T |
7701 |
gaagatgaaggaattagatatgatggattcaggtgatcttgaacacgtactagacatcgaagaagcacttcactactattctcgccttaaaagtccggtt |
7602 |
T |
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| Q |
183 |
tatttagatattgtcgacaagtttttca |
210 |
Q |
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| T |
7601 |
tatctagatattgtgaacaggtttttca |
7574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 83 - 210
Target Start/End: Complemental strand, 13285 - 13158
Alignment:
| Q |
83 |
gaagatgaaggaattggagatgaatgattcaggtgatgttgaacaagtactagatatagaagaagcacttcactattattctcgtctcaagagtcctatt |
182 |
Q |
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| T |
13285 |
gaagatgaagaaaatggatatgatggaatcaggtgatcttgaacatgtgctagacatagaagaagcacttcactactattctcgccttaaaagtccagtt |
13186 |
T |
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| Q |
183 |
tatttagatattgtcgacaagtttttca |
210 |
Q |
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| T |
13185 |
tatctcgatattgtggacaggtttttca |
13158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 281 - 340
Target Start/End: Original strand, 1894015 - 1894073
Alignment:
| Q |
281 |
atttggatcaatcaggttgtagataataatataaatcttaattcttgtggtgtatatgaa |
340 |
Q |
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| T |
1894015 |
atttagatcaaccaggttgtagata-tagcataaatcttaattcttgtggtgtatatgaa |
1894073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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