View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7155_low_5 (Length: 242)

Name: NF7155_low_5
Description: NF7155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7155_low_5
NF7155_low_5
[»] chr3 (13 HSPs)
chr3 (1-220)||(5338744-5338966)
chr3 (7-120)||(7900962-7901074)
chr3 (9-123)||(39583117-39583230)
chr3 (11-104)||(51234711-51234803)
chr3 (62-123)||(53785867-53785928)
chr3 (9-123)||(13582615-13582728)
chr3 (61-111)||(35236363-35236413)
chr3 (62-112)||(54508283-54508333)
chr3 (59-123)||(29861952-29862016)
chr3 (63-123)||(52741399-52741459)
chr3 (59-117)||(38146211-38146269)
chr3 (65-113)||(43123305-43123353)
chr3 (9-101)||(44198873-44198964)
[»] chr2 (15 HSPs)
chr2 (9-120)||(3825833-3825943)
chr2 (64-123)||(23484826-23484885)
chr2 (62-123)||(18744842-18744903)
chr2 (20-112)||(44686536-44686627)
chr2 (9-143)||(27502468-27502603)
chr2 (9-123)||(20142628-20142741)
chr2 (9-123)||(28225106-28225219)
chr2 (62-123)||(17344796-17344857)
chr2 (63-123)||(19161671-19161731)
chr2 (9-143)||(4412931-4413067)
chr2 (9-120)||(9674950-9675060)
chr2 (64-120)||(7760737-7760793)
chr2 (71-123)||(10579667-10579719)
chr2 (9-123)||(9685303-9685416)
chr2 (9-143)||(41867773-41867909)
[»] chr5 (11 HSPs)
chr5 (9-123)||(35310554-35310667)
chr5 (9-143)||(27336799-27336935)
chr5 (9-123)||(33691943-33692056)
chr5 (9-123)||(13166798-13166911)
chr5 (62-123)||(32269685-32269746)
chr5 (62-123)||(38446324-38446385)
chr5 (64-123)||(9841215-9841274)
chr5 (9-107)||(43129640-43129737)
chr5 (64-121)||(27355606-27355663)
chr5 (9-123)||(433398-433511)
chr5 (62-96)||(14423836-14423870)
[»] chr1 (11 HSPs)
chr1 (14-123)||(4861877-4861985)
chr1 (9-142)||(34644672-34644807)
chr1 (7-118)||(37932111-37932221)
chr1 (62-123)||(45659535-45659596)
chr1 (9-124)||(50161304-50161418)
chr1 (58-111)||(2764633-2764686)
chr1 (28-121)||(29169684-29169775)
chr1 (9-123)||(19035553-19035666)
chr1 (9-123)||(28041015-28041128)
chr1 (62-96)||(2898855-2898889)
chr1 (62-123)||(20259686-20259746)
[»] chr4 (14 HSPs)
chr4 (9-143)||(50000790-50000926)
chr4 (9-117)||(31847193-31847300)
chr4 (9-122)||(26521594-26521706)
chr4 (7-120)||(132489-132603)
chr4 (59-123)||(25706664-25706728)
chr4 (9-123)||(12053519-12053630)
chr4 (9-117)||(53619692-53619799)
chr4 (61-123)||(54927613-54927675)
chr4 (62-123)||(25504451-25504512)
chr4 (59-117)||(3330105-3330163)
chr4 (9-112)||(56462006-56462108)
chr4 (62-123)||(53170665-53170726)
chr4 (9-52)||(55933420-55933463)
chr4 (65-123)||(23809575-23809633)
[»] chr7 (16 HSPs)
chr7 (9-121)||(4501364-4501475)
chr7 (9-123)||(28517175-28517288)
chr7 (9-143)||(5825377-5825513)
chr7 (59-123)||(43857029-43857093)
chr7 (59-112)||(32584756-32584809)
chr7 (62-123)||(45613730-45613791)
chr7 (9-120)||(983055-983165)
chr7 (9-123)||(3676745-3676859)
chr7 (9-123)||(19277399-19277512)
chr7 (9-123)||(21326726-21326839)
chr7 (58-109)||(33202368-33202418)
chr7 (58-111)||(9266173-9266225)
chr7 (62-113)||(22198144-22198195)
chr7 (62-113)||(22239626-22239677)
chr7 (68-123)||(47679289-47679344)
chr7 (13-53)||(1249696-1249736)
[»] chr6 (13 HSPs)
chr6 (9-123)||(357605-357718)
chr6 (7-117)||(34304600-34304709)
chr6 (9-123)||(12401437-12401550)
chr6 (9-117)||(33220605-33220712)
chr6 (9-123)||(959686-959799)
chr6 (62-143)||(4206461-4206545)
chr6 (9-119)||(28543481-28543590)
chr6 (9-117)||(17249199-17249306)
chr6 (7-123)||(34415540-34415655)
chr6 (61-119)||(34554169-34554227)
chr6 (9-120)||(32115795-32115905)
chr6 (9-123)||(20693489-20693601)
chr6 (89-123)||(29337971-29338005)
[»] scaffold0490 (1 HSPs)
scaffold0490 (14-112)||(6445-6541)
[»] scaffold0110 (1 HSPs)
scaffold0110 (37-116)||(47434-47512)
[»] chr8 (14 HSPs)
chr8 (9-143)||(500333-500469)
chr8 (26-123)||(35739875-35739970)
chr8 (1-122)||(24125126-24125246)
chr8 (59-123)||(25021702-25021766)
chr8 (59-123)||(39434822-39434886)
chr8 (58-121)||(10189697-10189760)
chr8 (65-146)||(39671049-39671132)
chr8 (14-103)||(8619925-8620013)
chr8 (65-123)||(40839713-40839770)
chr8 (61-117)||(3188126-3188182)
chr8 (64-123)||(8115971-8116030)
chr8 (9-123)||(37517200-37517313)
chr8 (90-123)||(8390326-8390359)
chr8 (64-112)||(11611147-11611195)
[»] scaffold1768 (1 HSPs)
scaffold1768 (9-123)||(72-185)
[»] scaffold0031 (1 HSPs)
scaffold0031 (59-116)||(49570-49626)
[»] scaffold0119 (1 HSPs)
scaffold0119 (1-55)||(16232-16286)
[»] scaffold0148 (1 HSPs)
scaffold0148 (62-123)||(33407-33470)


Alignment Details
Target: chr3 (Bit Score: 169; Significance: 9e-91; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 5338744 - 5338966
Alignment:
Q  1 ttggcaattttgtttgacgcagctcttagggctgtctgtcctaccgtaaaagttcaaaacccctaatcccacaagtggtgaaacccaaatcaagtccaca 100  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||||||||| || ||| |||||||||||||||||||| |||||||||||||||||||    
T  5338744 ttggcaattttgtttgacgcaactcttagggctttctgtcctaccgtaaaagctctaaatccctaatcccacaagtggtgtaacccaaatcaagtccaca 5338843  T
Q  101 catgcatgtttttctcctaccca---atacaccgtaacatccgcagacccaattgaattatttttataggtttcttcgactagaagaaatcatatatcag 197  Q
     |||||||||||||| |||||||   ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  5338844 gatgcatgtttttcttctacccattcatacaccgtaacatccgcaaacccaattgaattatttttataggtttcttcaactagaagaaatcatatatcag 5338943  T
Q  198 acatgtctgattataaatgtaaa 220  Q
    |||||||||||||||||||||||    
T  5338944 acatgtctgattataaatgtaaa 5338966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 120
Target Start/End: Original strand, 7900962 - 7901074
Alignment:
Q  7 attttgtttgacgcagctcttagggctgtctgtcctaccgtaaaagttcaaaacccctaatcccacaagtggtgaaacccaaatcaagtccacacatgca 106  Q
    |||||| ||||||||| | |||||| | || |||||||||||||||  | || ||||||||||||||||||||||||||| | |||||||||||||||||    
T  7900962 attttgcttgacgcagtttttagggatatccgtcctaccgtaaaagacccaa-cccctaatcccacaagtggtgaaaccccagtcaagtccacacatgca 7901060  T
Q  107 tgtttttctcctac 120  Q
    |||||| |||||||    
T  7901061 tgttttcctcctac 7901074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 39583230 - 39583117
Alignment:
Q  9 tttgtttgacgcagctcttagggctgtctgtcctaccgtaaaagttcaaaacccctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatg 108  Q
    |||| ||||||||||| ||||||||| || ||||||| |||| |  |  | ||| |||||||||||||||| ||||| || |||||||||| ||||||||    
T  39583230 tttgcttgacgcagcttttagggctgcctatcctaccataaatggcccga-cccttaatcccacaagtggtaaaacctaagtcaagtccacgcatgcatg 39583132  T
Q  109 tttttctcctaccca 123  Q
    |||| ||||||||||    
T  39583131 ttttcctcctaccca 39583117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 104
Target Start/End: Original strand, 51234711 - 51234803
Alignment:
Q  11 tgtttgacgcagctcttagggctgtctgtcctaccgtaaaagttcaaaacccctaatcccacaagtggtgaaacccaaatcaagtccacacatg 104  Q
    |||||||||||| | |||||| ||| ||||||| ||||||||| |   |||||||| ||||||||||||||||||  |||||||||||||||||    
T  51234711 tgtttgacgcagtttttagggttgtttgtcctatcgtaaaagt-ctcgacccctaaacccacaagtggtgaaaccttaatcaagtccacacatg 51234803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 62 - 123
Target Start/End: Original strand, 53785867 - 53785928
Alignment:
Q  62 cctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatgtttttctcctaccca 123  Q
    ||||||||||| ||||||||||||| | ||||||| ||||||||||||||| ||||||||||    
T  53785867 cctaatcccactagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctaccca 53785928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 13582615 - 13582728
Alignment:
Q  9 tttgtttgacgcagctcttagggctgtctgtcctaccgtaaaagttcaaaacccctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatg 108  Q
    |||| ||||||||||| |||||||||  |||||||| |||||||  |  | | |||||||||||||||| |||||||    ||||||| |||||||||||    
T  13582615 tttgattgacgcagcttttagggctgcttgtcctacggtaaaaggcctga-cacctaatcccacaagtgttgaaacctcggtcaagtctacacatgcatg 13582713  T
Q  109 tttttctcctaccca 123  Q
    |||| ||||||||||    
T  13582714 ttttcctcctaccca 13582728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 61 - 111
Target Start/End: Original strand, 35236363 - 35236413
Alignment:
Q  61 ccctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatgttt 111  Q
    ||||||||||||| |||||||||||  ||||||||||||||||||||||||    
T  35236363 ccctaatcccacaggtggtgaaacctcaatcaagtccacacatgcatgttt 35236413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 62 - 112
Target Start/End: Complemental strand, 54508333 - 54508283
Alignment:
Q  62 cctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatgtttt 112  Q
    |||||||| |||||||||||||||| |||||||| ||||||||||||||||    
T  54508333 cctaatccaacaagtggtgaaaccccaatcaagtacacacatgcatgtttt 54508283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 123
Target Start/End: Original strand, 29861952 - 29862016
Alignment:
Q  59 acccctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatgtttttctcctaccca 123  Q
    ||||||||||  ||||||| | |||||| | |||||| |||||||||||||||| ||||||||||    
T  29861952 acccctaatctaacaagtgtttaaaccccagtcaagttcacacatgcatgttttcctcctaccca 29862016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 123
Target Start/End: Complemental strand, 52741459 - 52741399
Alignment:
Q  63 ctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatgtttttctcctaccca 123  Q
    |||||||||||||||||||||||  | ||||||| ||||| ||||||||| | ||||||||    
T  52741459 ctaatcccacaagtggtgaaacctcagtcaagtctacacaagcatgttttccacctaccca 52741399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 117
Target Start/End: Original strand, 38146211 - 38146269
Alignment:
Q  59 acccctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatgtttttctcc 117  Q
    |||||||||||||||||| ||||||||| |  ||||||| ||||||||| |||| ||||    
T  38146211 acccctaatcccacaagtcgtgaaaccccatgcaagtcctcacatgcatattttcctcc 38146269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 43123305 - 43123353
Alignment:
Q  65 aatcccacaagtggtgaaacccaaatcaagtccacacatgcatgttttt 113  Q
    ||||||||||| |||||||||| ||| |||||||||||||  |||||||    
T  43123305 aatcccacaagaggtgaaaccccaattaagtccacacatgtttgttttt 43123353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 44198873 - 44198964
Alignment:
Q  9 tttgtttgacgcagctcttagggctgtctgtcctaccgtaaaagttcaaaacccctaatcccacaagtggtgaaacccaaatcaagtccacac 101  Q
    |||| |||||||| || |||| |||| ||| ||||| ||||||| ||  | | ||||||||||||||||||||||||| | ||||||| ||||    
T  44198873 tttgcttgacgcaacttttagagctgcctgacctacggtaaaaggtccga-cacctaatcccacaagtggtgaaaccccagtcaagtctacac 44198964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 9 - 120
Target Start/End: Original strand, 3825833 - 3825943
Alignment:
Q  9 tttgtttgacgcagctcttagggctgtctgtcctaccgtaaaagttcaaaacccctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatg 108  Q
    |||| ||||||||||| |||||||| |||||| |||||||||||| |  | |||||||||||||||| |||||||||  |||||||||||||||||||||    
T  3825833 tttgcttgacgcagcttttagggctctctgtcataccgtaaaagtcctga-cccctaatcccacaaggggtgaaacctcaatcaagtccacacatgcatg 3825931  T
Q  109 tttttctcctac 120  Q
    ||||||||||||    
T  3825932 tttttctcctac 3825943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 64 - 123
Target Start/End: Complemental strand, 23484885 - 23484826
Alignment:
Q  64 taatcccacaagtggtgaaacccaaatcaagtccacacatgcatgtttttctcctaccca 123  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||    
T  23484885 taatcccacaagtggtgaaaccccaatcaagtctacacatgcatgttttcctcctaccca 23484826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 62 - 123
Target Start/End: Complemental strand, 18744903 - 18744842
Alignment:
Q  62 cctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatgtttttctcctaccca 123  Q
    ||||||||||||||||||||||||| | ||||||| ||||||||||||||| ||||||||||    
T  18744903 cctaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctaccca 18744842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 20 - 112
Target Start/End: Original strand, 44686536 - 44686627
Alignment:
Q  20 cagctcttagggctgtctgtcctaccgtaaaagttcaaaacccctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatgtttt 112  Q
    ||||| ||||| |||||||||||| ||||||||  |  | ||||||| ||||||||||||||||||| | |||||||||||||||||||||||    
T  44686536 cagcttttaggactgtctgtcctatcgtaaaagccccga-cccctaaacccacaagtggtgaaaccccagtcaagtccacacatgcatgtttt 44686627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 27502468 - 27502603
Alignment:
Q  9 tttgtttgacgcagctcttagggctgtctgtcctaccgtaaaagttcaaaacccctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatg 108  Q
    |||| ||||||||||| |||||| | | ||||||| |||||||| ||  | ||||||| ||||||||||||||||||| | ||| |||||||||||||||    
T  27502468 tttgcttgacgcagcttttagggttat-tgtcctatcgtaaaagctctga-cccctaaacccacaagtggtgaaaccccattcaggtccacacatgcatg 27502565  T
Q  109 tttttctcctaccca---atacaccgtaacatccgcag 143  Q
    |||| |||| |||||    |||||| ||||||||||||    
T  27502566 ttttcctccaacccatccgtacaccataacatccgcag 27502603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 20142741 - 20142628
Alignment:
Q  9 tttgtttgacgcagctcttagggctgtctgtcctaccgtaaaagttcaaaacccctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatg 108  Q
    |||| |||||| |||| |||| |||| ||||||||| ||||||| | |  || ||||||||||||||||||||| ||| ||||||||| ||||| |||||    
T  20142741 tttgcttgacgaagcttttagagctgcctgtcctacggtaaaaggt-acgacacctaatcccacaagtggtgaagccccaatcaagtctacacaagcatg 20142643  T
Q  109 tttttctcctaccca 123  Q
    |||| | ||||||||    
T  20142642 ttttccacctaccca 20142628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 28225106 - 28225219
Alignment:
Q  9 tttgtttgacgcagctcttagggctgtctgtcctaccgtaaaagttcaaaacccctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatg 108  Q
    |||| ||||||||||| |||  | ||| ||||||||||||||||  | || | ||||| ||||||||| ||||||||| | |||||||||||||||||||    
T  28225106 tttgcttgacgcagcttttaaagttgtttgtcctaccgtaaaagccctaa-ctcctaagcccacaagtagtgaaaccccattcaagtccacacatgcatg 28225204  T
Q  109 tttttctcctaccca 123  Q
    |||| |||| |||||    
T  28225205 ttttcctccaaccca 28225219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 62 - 123
Target Start/End: Original strand, 17344796 - 17344857
Alignment:
Q  62 cctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatgtttttctcctaccca 123  Q
    ||||||||||||||| ||||||||| | ||||||| ||||||||||||||| ||||||||||    
T  17344796 cctaatcccacaagttgtgaaaccccagtcaagtctacacatgcatgttttcctcctaccca 17344857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 123
Target Start/End: Complemental strand, 19161731 - 19161671
Alignment:
Q  63 ctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatgtttttctcctaccca 123  Q
    |||||| ||||||||||||||||| | ||||||| ||||||||||||||| ||||||||||    
T  19161731 ctaatctcacaagtggtgaaaccctattcaagtctacacatgcatgttttcctcctaccca 19161671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 4413067 - 4412931
Alignment:
Q  9 tttgtttgacgcagctcttagggctgtctgtcctaccgtaaaagttcaaaacccctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatg 108  Q
    |||| ||||| ||||| |||||| || ||||||||| ||||||| ||  | | | ||||||||||||||||||||||| | ||||||| ||||| |||||    
T  4413067 tttgcttgacacagcttttagggttgcctgtcctacggtaaaaggtctga-cacttaatcccacaagtggtgaaaccccagtcaagtctacacaagcatg 4412969  T
Q  109 tttttctcctaccca---atacaccgtaacatccgcag 143  Q
    |||| | ||||||||    |||||| ||||||||||||    
T  4412968 ttttccacctacccatccgtacaccataacatccgcag 4412931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 120
Target Start/End: Original strand, 9674950 - 9675060
Alignment:
Q  9 tttgtttgacgcagctcttagggctgtctgtcctaccgtaaaagttcaaaacccctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatg 108  Q
    |||||||||||||  | |||||||| | ||||||||| |||||| ||   | |||||||||||  ||||||||||||| |||||||| || |||||||||    
T  9674950 tttgtttgacgcatattttagggctatttgtcctaccataaaaggtc-tgatccctaatcccatgagtggtgaaaccccaatcaagttcatacatgcatg 9675048  T
Q  109 tttttctcctac 120  Q
    |||| |||||||    
T  9675049 ttttcctcctac 9675060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 120
Target Start/End: Complemental strand, 7760793 - 7760737
Alignment:
Q  64 taatcccacaagtggtgaaacccaaatcaagtccacacatgcatgtttttctcctac 120  Q
    ||||||||||||||||||||||| | |||||| |||||||| ||||||| |||||||    
T  7760793 taatcccacaagtggtgaaaccctagtcaagttcacacatgtatgttttcctcctac 7760737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 123
Target Start/End: Complemental strand, 10579719 - 10579667
Alignment:
Q  71 acaagtggtgaaacccaaatcaagtccacacatgcatgtttttctcctaccca 123  Q
    |||||||||||||||| | ||||||||||| ||||||||||| ||||||||||    
T  10579719 acaagtggtgaaaccccagtcaagtccacaaatgcatgttttcctcctaccca 10579667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 9685416 - 9685303
Alignment:
Q  9 tttgtttgacgcagctcttagggctgtctgtcctaccgtaaaagttcaaaacccctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatg 108  Q
    |||| ||||||| | | ||||||||| || |||||| ||||||| ||  | | ||||||||||||||||||||||||| | ||||||| |||||  ||||    
T  9685416 tttgcttgacgcggattttagggctgcctatcctacggtaaaaggtctga-cacctaatcccacaagtggtgaaaccccagtcaagtctacacaatcatg 9685318  T
Q  109 tttttctcctaccca 123  Q
    |||| | ||||||||    
T  9685317 ttttccacctaccca 9685303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 41867909 - 41867773
Alignment:
Q  9 tttgtttgacgcagctcttagggctgtctgtcctaccgtaaaagttcaaaacccctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatg 108  Q
    |||| ||||||||||| ||| ||||| |||||||||  |||||| ||  | | ||||||||||||||| |||||| |  | ||||||| ||||| |||||    
T  41867909 tttgcttgacgcagcttttaaggctgcctgtcctacgataaaaggtccga-cacctaatcccacaagtcgtgaaatctcagtcaagtctacacaagcatg 41867811  T
Q  109 tttttctcctaccca---atacaccgtaacatccgcag 143  Q
    |||| | ||||||||    |||||| ||||||||||||    
T  41867810 ttttccacctacccatctgtacaccataacatccgcag 41867773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 35310554 - 35310667
Alignment:
Q  9 tttgtttgacgcagctcttagggctgtctgtcctaccgtaaaagttcaaaacccctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatg 108  Q
    |||| |||||||| || |||||| ||||||||||||||||||||  |  | ||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  35310554 tttgcttgacgcatcttttagggttgtctgtcctaccgtaaaagccccga-cccctaaacccacaagtggtgaaaccccaatcaagtccacacatgcatg 35310652  T
Q  109 tttttctcctaccca 123  Q
    |||| |||| |||||    
T  35310653 ttttcctccaaccca 35310667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 27336799 - 27336935
Alignment:
Q  9 tttgtttgacgcagctcttagggctgtctgtcctaccgtaaaagttcaaaacccctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatg 108  Q
    |||| |||||||| || ||||||||||||||||||  |||||||  |  | ||||||| ||||||||||||||||||| | |||||||||||||||||||    
T  27336799 tttgcttgacgcaacttttagggctgtctgtcctattgtaaaagccccca-cccctaaacccacaagtggtgaaaccccagtcaagtccacacatgcatg 27336897  T
Q  109 tttttctcctaccca---atacaccgtaacatccgcag 143  Q
    |||| |||| |||||    |||||| ||||||||||||    
T  27336898 ttttcctccaacccatccgtacaccataacatccgcag 27336935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 33692056 - 33691943
Alignment:
Q  9 tttgtttgacgcagctcttagggctgtctgtcctaccgtaaaagttcaaaacccctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatg 108  Q
    |||| ||||||||||| ||||| ||| |||||||||||||||||  |  | ||||||| ||||||||||||||||||  | |||||||||||||||||||    
T  33692056 tttgcttgacgcagcttttaggcctgcctgtcctaccgtaaaagccccga-cccctaaacccacaagtggtgaaacctcagtcaagtccacacatgcatg 33691958  T
Q  109 tttttctcctaccca 123  Q
    |||| |||| |||||    
T  33691957 ttttcctccaaccca 33691943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 13166911 - 13166798
Alignment:
Q  9 tttgtttgacgcagctcttagggctgtctgtcctaccgtaaaagttcaaaacccctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatg 108  Q
    |||| ||||||||| | |||||| ||||||||| ||||||||||  | || ||   ||  |||||||||||||||||||  |||||||||||||||||||    
T  13166911 tttgcttgacgcagattttagggttgtctgtcccaccgtaaaagccctaacccataaaatccacaagtggtgaaacccag-tcaagtccacacatgcatg 13166813  T
Q  109 tttttctcctaccca 123  Q
    |||| |||| |||||    
T  13166812 ttttcctccaaccca 13166798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 123
Target Start/End: Complemental strand, 32269746 - 32269685
Alignment:
Q  62 cctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatgtttttctcctaccca 123  Q
    |||||| ||| |||||||||||||| | ||||||| ||||||||||||||| ||||||||||    
T  32269746 cctaattccagaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctaccca 32269685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 123
Target Start/End: Original strand, 38446324 - 38446385
Alignment:
Q  62 cctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatgtttttctcctaccca 123  Q
    ||||| ||||||||||||||||||  | ||||||||||||||||||||||| |||| |||||    
T  38446324 cctaaacccacaagtggtgaaacctcagtcaagtccacacatgcatgttttactccaaccca 38446385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 123
Target Start/End: Complemental strand, 9841274 - 9841215
Alignment:
Q  64 taatcccacaagtggtgaaacccaaatcaagtccacacatgcatgtttttctcctaccca 123  Q
    ||||||||||||||||||||||| | ||||||  ||||| |||||||||||| |||||||    
T  9841274 taatcccacaagtggtgaaaccctactcaagtttacacacgcatgtttttcttctaccca 9841215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 107
Target Start/End: Original strand, 43129640 - 43129737
Alignment:
Q  9 tttgtttgacgcagctcttagggctgtctgtcctaccgtaaaagttcaaaacccctaatcccacaagtggtgaaacccaaatcaagtccacacatgcat 107  Q
    |||| |||||||| || ||||| |||  ||||| |||||||||||||  | |||||||||| |||||||||||||||| | |||| | |||||||||||    
T  43129640 tttgcttgacgcatcttttaggactgaatgtccaaccgtaaaagttccga-cccctaatccaacaagtggtgaaaccccagtcaatttcacacatgcat 43129737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 121
Target Start/End: Complemental strand, 27355663 - 27355606
Alignment:
Q  64 taatcccacaagtggtgaaacccaaatcaagtccacacatgcatgtttttctcctacc 121  Q
    ||||||||||||||||||||||| | |||| || |||||| |||||||| ||||||||    
T  27355663 taatcccacaagtggtgaaaccccattcaattcaacacatccatgttttcctcctacc 27355606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 433398 - 433511
Alignment:
Q  9 tttgtttgacgcagctcttagggctgtctgtcctaccgtaaaagttcaaaacccctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatg 108  Q
    |||| ||||| ||||| ||| || ||||| ||||||||||||||  |  | ||| ||| |||||| ||||||||||||   ||||||||||||||||||     
T  433398 tttgcttgacacagcttttaaggttgtctatcctaccgtaaaagccccta-cccttaaacccacaggtggtgaaaccccggtcaagtccacacatgcata 433496  T
Q  109 tttttctcctaccca 123  Q
    |||| |||| |||||    
T  433497 ttttcctccaaccca 433511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 96
Target Start/End: Original strand, 14423836 - 14423870
Alignment:
Q  62 cctaatcccacaagtggtgaaacccaaatcaagtc 96  Q
    ||||||||||||||||||||||||| |||||||||    
T  14423836 cctaatcccacaagtggtgaaaccccaatcaagtc 14423870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 123
Target Start/End: Complemental strand, 4861985 - 4861877
Alignment:
Q  14 ttgacgcagctcttagggctgtctgtcctaccgtaaaagttcaaaacccctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatgttttt 113  Q
    |||||||| || ||| |||||||||||||||| |||| || ||| ||||||||||| |||||||||||||| | | |||| |||||||||||||||||||    
T  4861985 ttgacgcaacttttaaggctgtctgtcctaccataaatgt-caagacccctaatccaacaagtggtgaaacaccagtcaaatccacacatgcatgttttt 4861887  T
Q  114 ctcctaccca 123  Q
    ||||||||||    
T  4861886 ctcctaccca 4861877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 142
Target Start/End: Original strand, 34644672 - 34644807
Alignment:
Q  9 tttgtttgacgcagctcttagggctgtctgtcctaccgtaaaagttcaaaacccctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatg 108  Q
    ||||||||||||| || |||||| ||  ||||||||||||||||  |  | ||||||| ||||||||||||||||||| | |||||||||||||||||||    
T  34644672 tttgtttgacgcaacttttagggttgcttgtcctaccgtaaaagccccga-cccctaaacccacaagtggtgaaaccccagtcaagtccacacatgcatg 34644770  T
Q  109 tttttctcctaccca---atacaccgtaacatccgca 142  Q
    |||| ||||  ||||   ||||||| |||||||||||    
T  34644771 ttttcctccagcccatccatacaccataacatccgca 34644807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 7 - 118
Target Start/End: Complemental strand, 37932221 - 37932111
Alignment:
Q  7 attttgtttgacgcagctcttagggctgtctgtcctaccgtaaaagttcaaaacccctaatcccacaagtggtgaaacccaaatcaagtccacacatgca 106  Q
    |||||| ||||| || || ||||||||||||||| ||| |||||||  |    ||||||||||||||||||||||||||  |||||||||||| ||||||    
T  37932221 attttgcttgacacaacttttagggctgtctgtcttactgtaaaagc-cttggcccctaatcccacaagtggtgaaacctcaatcaagtccacgcatgca 37932123  T
Q  107 tgtttttctcct 118  Q
    |||||| |||||    
T  37932122 tgttttcctcct 37932111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 62 - 123
Target Start/End: Complemental strand, 45659596 - 45659535
Alignment:
Q  62 cctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatgtttttctcctaccca 123  Q
    ||||||||||||||||||||||||| | ||||||| || |||||||||||| ||||||||||    
T  45659596 cctaatcccacaagtggtgaaaccccagtcaagtctacgcatgcatgttttcctcctaccca 45659535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 124
Target Start/End: Complemental strand, 50161418 - 50161304
Alignment:
Q  9 tttgtttgacgcagctcttagggctgtctgtcctaccgtaaaagttcaaaacccctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatg 108  Q
    |||| |||||||| || |||||| |||||||||||||||||||| ||  | |||||||| |||| ||||||||||      | |||||||||||||||||    
T  50161418 tttgcttgacgcaacttttagggttgtctgtcctaccgtaaaag-tctcagcccctaattccacgagtggtgaaatatcggttaagtccacacatgcatg 50161320  T
Q  109 tttttctcctacccaa 124  Q
    |||||||| |||||||    
T  50161319 tttttctcttacccaa 50161304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 2764633 - 2764686
Alignment:
Q  58 aacccctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatgttt 111  Q
    ||||||||| ||||||||||||||||||  |||||||| |||||||||||||||    
T  2764633 aacccctaaacccacaagtggtgaaacctcaatcaagttcacacatgcatgttt 2764686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 121
Target Start/End: Complemental strand, 29169775 - 29169684
Alignment:
Q  28 agggctgtctgtcctaccgtaaaagttcaaaacccctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatgtttttctcctacc 121  Q
    ||||||||||||||||| |||||||  |  | | |||||||||| |||||||||||||| | ||||||| ||||||||||||||| ||||||||    
T  29169775 agggctgtctgtcctacggtaaaaggcccga-cacctaatccca-aagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctacc 29169684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 19035553 - 19035666
Alignment:
Q  9 tttgtttgacgcagctcttagggctgtctgtcctaccgtaaaagttcaaaacccctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatg 108  Q
    |||| ||||||||||| ||||||||| ||| ||||| ||||||| ||  | | ||||||||||||| |||||||| || | ||||||| ||||| |||||    
T  19035553 tttgcttgacgcagcttttagggctgcctgccctacggtaaaaggtccga-cacctaatcccacaactggtgaaatcccagtcaagtctacacaagcatg 19035651  T
Q  109 tttttctcctaccca 123  Q
    | || | ||||||||    
T  19035652 tgttccacctaccca 19035666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 28041128 - 28041015
Alignment:
Q  9 tttgtttgacgcagctcttagggctgtctgtcctaccgtaaaagttcaaaacccctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatg 108  Q
    |||||||||||| | | |||| |||| || |||||| ||||||| ||  | | ||||||||||||||| ||||||||| | ||||||| ||||| |||||    
T  28041128 tttgtttgacgcggattttagagctgcctatcctacggtaaaaggtccga-cacctaatcccacaagtagtgaaaccccagtcaagtctacacaagcatg 28041030  T
Q  109 tttttctcctaccca 123  Q
    |||| | ||||||||    
T  28041029 ttttccacctaccca 28041015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 96
Target Start/End: Original strand, 2898855 - 2898889
Alignment:
Q  62 cctaatcccacaagtggtgaaacccaaatcaagtc 96  Q
    ||||||| |||||||||||||||||||||||||||    
T  2898855 cctaatcacacaagtggtgaaacccaaatcaagtc 2898889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 123
Target Start/End: Complemental strand, 20259746 - 20259686
Alignment:
Q  62 cctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatgtttttctcctaccca 123  Q
    |||||||||||||| ||| |||||| | ||| ||| ||||||||||||||||| ||||||||    
T  20259746 cctaatcccacaagcggtaaaaccctagtcatgtctacacatgcatgtttttc-cctaccca 20259686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 50000926 - 50000790
Alignment:
Q  9 tttgtttgacgcagctcttagggctgtctgtcctaccgtaaaagttcaaaacccctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatg 108  Q
    |||| ||||||||||| |||| ||||||||||||||||||||||  |  | ||| ||| ||||||||||||||||||| | |||||||||||||||||||    
T  50000926 tttgcttgacgcagcttttagagctgtctgtcctaccgtaaaagcccccaccccttaa-cccacaagtggtgaaaccccagtcaagtccacacatgcatg 50000828  T
Q  109 tttttctcctaccca---atacaccgtaacatccgcag 143  Q
    |||| |||| |||||    |||||| ||||||||||||    
T  50000827 ttttcctccaacccatccgtacaccataacatccgcag 50000790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 117
Target Start/End: Original strand, 31847193 - 31847300
Alignment:
Q  9 tttgtttgacgcagctcttagggctgtctgtcctaccgtaaaagttcaaaacccctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatg 108  Q
    |||| ||||||||||| ||||||||| ||||||||| |||||||  |  | ||||||| ||||||||||||||||||| | |||||||||||||||||||    
T  31847193 tttgcttgacgcagcttttagggctgcctgtcctactgtaaaagccccca-cccctaaacccacaagtggtgaaaccctagtcaagtccacacatgcatg 31847291  T
Q  109 tttttctcc 117  Q
    |||| ||||    
T  31847292 ttttcctcc 31847300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 9 - 122
Target Start/End: Original strand, 26521594 - 26521706
Alignment:
Q  9 tttgtttgacgcagctcttagggctgtctgtcctaccgtaaaagttcaaaacccctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatg 108  Q
    ||||||||||||| || |||||| ||| ||||||||| |||||| ||  | |||||||||||||||||| |||||| | | ||||||||| |||||||||    
T  26521594 tttgtttgacgcaacttttagggttgtttgtcctaccataaaaggtctga-cccctaatcccacaagtgatgaaactccagtcaagtccatacatgcatg 26521692  T
Q  109 tttttctcctaccc 122  Q
    |||| |||||||||    
T  26521693 ttttcctcctaccc 26521706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 120
Target Start/End: Original strand, 132489 - 132603
Alignment:
Q  7 attttgtttgacgcagctcttagggctgtctgtcctac--cgtaaaagttcaaaacccctaatcccacaagtggtgaaacccaaatcaagtccacacatg 104  Q
    |||||| ||||||||||| ||||||||| |||||||||  ||||||||| |  | |||||||||| |||||||||||||||| | |||||| ||||||||    
T  132489 attttgcttgacgcagcttttagggctgcctgtcctacaccgtaaaagtcccga-cccctaatccaacaagtggtgaaaccccagtcaagttcacacatg 132587  T
Q  105 catgtttttctcctac 120  Q
    ||| |||| |||||||    
T  132588 catattttcctcctac 132603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 59 - 123
Target Start/End: Original strand, 25706664 - 25706728
Alignment:
Q  59 acccctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatgtttttctcctaccca 123  Q
    |||| |||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  25706664 acccttaatccgacaggtagtgaaacccaaatcaagtccacacatgcatgtttttctcctaccca 25706728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 12053519 - 12053630
Alignment:
Q  9 tttgtttgacgcagctcttagggctgtctgtcctaccgtaaaagttcaaaacccctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatg 108  Q
    |||||||||||||||| |||| ||||| |||||||| ||||||||  |   |||| ||||| || | ||||||||||| ||| | |||||||||||||||    
T  12053519 tttgtttgacgcagcttttagagctgtttgtcctactgtaaaagtcga---cccccaatccaactaatggtgaaaccccaataatgtccacacatgcatg 12053615  T
Q  109 tttttctcctaccca 123  Q
    |||| ||||||||||    
T  12053616 ttttcctcctaccca 12053630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 117
Target Start/End: Original strand, 53619692 - 53619799
Alignment:
Q  9 tttgtttgacgcagctcttagggctgtctgtcctaccgtaaaagttcaaaacccctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatg 108  Q
    |||| ||||||||||| |||||| || ||||||||| |||||||  |  | || |||| ||||||||||||||||||| | |||||||||||||||||||    
T  53619692 tttgcttgacgcagcttttagggttgcctgtcctactgtaaaagccccca-cctctaaacccacaagtggtgaaaccccagtcaagtccacacatgcatg 53619790  T
Q  109 tttttctcc 117  Q
    |||| ||||    
T  53619791 ttttcctcc 53619799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 61 - 123
Target Start/End: Original strand, 54927613 - 54927675
Alignment:
Q  61 ccctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatgtttttctcctaccca 123  Q
    |||||| ||||||||||| ||||||| ||||||||||||||||||||||||  ||||||||||    
T  54927613 ccctaaacccacaagtggggaaaccccaatcaagtccacacatgcatgtttccctcctaccca 54927675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 62 - 123
Target Start/End: Original strand, 25504451 - 25504512
Alignment:
Q  62 cctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatgtttttctcctaccca 123  Q
    ||||||||||||||||||||||||  | ||||||| | ||||||||||||||||||||||||    
T  25504451 cctaatcccacaagtggtgaaacctcagtcaagtctatacatgcatgtttttctcctaccca 25504512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 59 - 117
Target Start/End: Original strand, 3330105 - 3330163
Alignment:
Q  59 acccctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatgtttttctcc 117  Q
    |||||||| ||||||||||||||||||| | ||||||||||||||||| ||||| ||||    
T  3330105 acccctaaacccacaagtggtgaaaccccagtcaagtccacacatgcacgttttcctcc 3330163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 112
Target Start/End: Complemental strand, 56462108 - 56462006
Alignment:
Q  9 tttgtttgacgcagctcttagggctgtctgtcctaccgtaaaagttcaaaacccctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatg 108  Q
    ||||||||||||| || ||||||  |||| | | ||||||||||| |   ||||||||||| |||| ||||||||||  | |||||||||||||||||||    
T  56462108 tttgtttgacgcaacttttagggtggtctatacaaccgtaaaagt-ctcgacccctaatccaacaaatggtgaaacctcagtcaagtccacacatgcatg 56462010  T
Q  109 tttt 112  Q
    ||||    
T  56462009 tttt 56462006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 123
Target Start/End: Original strand, 53170665 - 53170726
Alignment:
Q  62 cctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatgtttttctcctaccca 123  Q
    ||||||||||| ||||||||||||| | ||||||| ||||| ||||||||| | ||||||||    
T  53170665 cctaatcccacgagtggtgaaaccccagtcaagtctacacaagcatgttttccacctaccca 53170726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 52
Target Start/End: Complemental strand, 55933463 - 55933420
Alignment:
Q  9 tttgtttgacgcagctcttagggctgtctgtcctaccgtaaaag 52  Q
    ||||||||||||| || ||||||||| |||||||||||||||||    
T  55933463 tttgtttgacgcaacttttagggctgactgtcctaccgtaaaag 55933420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 123
Target Start/End: Complemental strand, 23809633 - 23809575
Alignment:
Q  65 aatcccacaagtggtgaaacccaaatcaagtccacacatgcatgtttttctcctaccca 123  Q
    |||||||||||||   |||||  ||||||||||||||||||| |||| |||||||||||    
T  23809633 aatcccacaagtgcaaaaacctcaatcaagtccacacatgcacgtttctctcctaccca 23809575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 121
Target Start/End: Original strand, 4501364 - 4501475
Alignment:
Q  9 tttgtttgacgcagctcttagggctgtctgtcctaccgtaaaagttcaaaacccctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatg 108  Q
    |||||||||||||||| |||||| ||| |||||||| |||||||  |  | | ||||||||||||||||||||||||| | ||||||| |||||||||||    
T  4501364 tttgtttgacgcagcttttagggttgtttgtcctacggtaaaaggcccga-cacctaatcccacaagtggtgaaaccccagtcaagtctacacatgcatg 4501462  T
Q  109 tttttctcctacc 121  Q
    |||| ||||||||    
T  4501463 ttttcctcctacc 4501475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 28517288 - 28517175
Alignment:
Q  9 tttgtttgacgcagctcttagggctgtctgtcctaccgtaaaagttcaaaacccctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatg 108  Q
    |||| ||||||||||| |||||| |||||||||||| |||||||  |  | ||||||| ||||||||||||||||||| | |||||||||||||| ||||    
T  28517288 tttgcttgacgcagcttttagggttgtctgtcctactgtaaaagccccca-cccctaaacccacaagtggtgaaaccccagtcaagtccacacatacatg 28517190  T
Q  109 tttttctcctaccca 123  Q
    |||| |||| |||||    
T  28517189 ttttcctccaaccca 28517175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 5825377 - 5825513
Alignment:
Q  9 tttgtttgacgcagctcttagggctgtctgtcctaccgtaaaagttcaaaacccctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatg 108  Q
    |||| |||| |||||| ||||||||  ||||||| |||||||||  |   |||||||| ||||||||||||||||||| | |||||||||||||||||||    
T  5825377 tttgcttgatgcagcttttagggcttcctgtcctgccgtaaaagc-ctcgacccctaaacccacaagtggtgaaaccccagtcaagtccacacatgcatg 5825475  T
Q  109 tttttctcctaccca---atacaccgtaacatccgcag 143  Q
    |||| |||| |||||    |||||| ||||||||||||    
T  5825476 ttttcctccaacccattcgtacaccataacatccgcag 5825513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 59 - 123
Target Start/End: Original strand, 43857029 - 43857093
Alignment:
Q  59 acccctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatgtttttctcctaccca 123  Q
    ||||||||||||||||||||||||||||   |||||||||| |||| ||||||||||||||||||    
T  43857029 acccctaatcccacaagtggtgaaacccccgtcaagtccacgcatgtatgtttttctcctaccca 43857093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 32584756 - 32584809
Alignment:
Q  59 acccctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatgtttt 112  Q
    ||||||||||||||||| |||||||||| | |||||||||||||||||||||||    
T  32584756 acccctaatcccacaagaggtgaaacccgagtcaagtccacacatgcatgtttt 32584809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 62 - 123
Target Start/End: Complemental strand, 45613791 - 45613730
Alignment:
Q  62 cctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatgtttttctcctaccca 123  Q
    |||||||| |||||||||||||||| | ||||||| ||||||||||||||| ||||||||||    
T  45613791 cctaatcctacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctaccca 45613730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 120
Target Start/End: Original strand, 983055 - 983165
Alignment:
Q  9 tttgtttgacgcagctcttagggctgtctgtcctaccgtaaaagttcaaaacccctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatg 108  Q
    |||| ||||||||||| ||| ||||| |||||||||  |||||| ||  | | |||||||||||||||||| |||||| | ||||||| ||||| |||||    
T  983055 tttgcttgacgcagcttttatggctgcctgtcctacaataaaaggtccca-cacctaatcccacaagtggttaaaccctagtcaagtctacacaagcatg 983153  T
Q  109 tttttctcctac 120  Q
    |||||| |||||    
T  983154 tttttcacctac 983165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 3676745 - 3676859
Alignment:
Q  9 tttgtttgacgcagctcttagggctgtc-tgtcctaccgtaaaagttcaaaacccctaatcccacaagtggtgaaacccaaatcaagtccacacatgcat 107  Q
    |||| ||||||||||| ||||||||| | |||||||| |||||||  |  | | ||||||||||||||||||||||||| | ||||||| ||||| ||||    
T  3676745 tttgcttgacgcagcttttagggctggcctgtcctacggtaaaaggaccga-cacctaatcccacaagtggtgaaaccccagtcaagtctacacaagcat 3676843  T
Q  108 gtttttctcctaccca 123  Q
    ||||| | ||||||||    
T  3676844 gttttccacctaccca 3676859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 19277399 - 19277512
Alignment:
Q  9 tttgtttgacgcagctcttagggctgtctgtcctaccgtaaaagttcaaaacccctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatg 108  Q
    |||| ||||||||||| ||||| ||| ||||||||| | ||||| ||  || || |||||| |||||||||||||||| | ||||||| ||||| |||||    
T  19277399 tttgcttgacgcagcttttaggactgcctgtcctacggcaaaaggtctgaaacc-taatccgacaagtggtgaaaccccagtcaagtctacacaagcatg 19277497  T
Q  109 tttttctcctaccca 123  Q
    |||| | ||||||||    
T  19277498 ttttccacctaccca 19277512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 21326839 - 21326726
Alignment:
Q  9 tttgtttgacgcagctcttagggctgtctgtcctaccgtaaaagttcaaaacccctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatg 108  Q
    |||| ||||||| ||| |||||||||| |||||||| ||||||| ||  | | ||||||||||||||||||||||| | |||||| || ||||| | |||    
T  21326839 tttgcttgacgcggcttttagggctgtttgtcctacggtaaaaggtccga-cacctaatcccacaagtggtgaaactccaatcaaatctacacaagtatg 21326741  T
Q  109 tttttctcctaccca 123  Q
    |||| | ||||||||    
T  21326740 ttttccacctaccca 21326726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 109
Target Start/End: Complemental strand, 33202418 - 33202368
Alignment:
Q  58 aacccctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatgt 109  Q
    |||||||||||||||||| |||||||||| | ||||||||||||||||||||    
T  33202418 aacccctaatcccacaagcggtgaaaccc-agtcaagtccacacatgcatgt 33202368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 9266225 - 9266173
Alignment:
Q  58 aacccctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatgttt 111  Q
    |||||||||||||||||||||||||||||   |||| |||||||||||||||||    
T  9266225 aacccctaatcccacaagtggtgaaaccc-ggtcaaatccacacatgcatgttt 9266173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 113
Target Start/End: Original strand, 22198144 - 22198195
Alignment:
Q  62 cctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatgttttt 113  Q
    ||||||| ||||||||| ||||||| |||||| || ||||||||||||||||    
T  22198144 cctaatcgcacaagtggcgaaaccccaatcaaatctacacatgcatgttttt 22198195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 113
Target Start/End: Complemental strand, 22239677 - 22239626
Alignment:
Q  62 cctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatgttttt 113  Q
    ||||||| ||||||||| ||||||| |||||| || ||||||||||||||||    
T  22239677 cctaatcgcacaagtggcgaaaccccaatcaaatctacacatgcatgttttt 22239626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 123
Target Start/End: Original strand, 47679289 - 47679344
Alignment:
Q  68 cccacaagtggtgaaacccaaatcaagtccacacatgcatgtttttctcctaccca 123  Q
    ||||||||||||||||||| | ||||||| | ||||| ||||||| ||||||||||    
T  47679289 cccacaagtggtgaaaccctagtcaagtctagacatgtatgttttcctcctaccca 47679344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 1249696 - 1249736
Alignment:
Q  13 tttgacgcagctcttagggctgtctgtcctaccgtaaaagt 53  Q
    |||||||||| | |||||||||||| |||||||||||||||    
T  1249696 tttgacgcaggttttagggctgtctatcctaccgtaaaagt 1249736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 357718 - 357605
Alignment:
Q  9 tttgtttgacgcagctcttagggctgtctgtcctaccgtaaaagttcaaaacccctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatg 108  Q
    |||| |||||| |||| ||||||||| |||||||||||||||||  |  | ||||||| ||||||||||||||||| | | |||||||||||||||||||    
T  357718 tttgcttgacgaagcttttagggctgcctgtcctaccgtaaaagcaccga-cccctaaacccacaagtggtgaaactccagtcaagtccacacatgcatg 357620  T
Q  109 tttttctcctaccca 123  Q
    |||| |||| |||||    
T  357619 ttttgctccaaccca 357605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 7 - 117
Target Start/End: Original strand, 34304600 - 34304709
Alignment:
Q  7 attttgtttgacgcagctcttagggctgtctgtcctaccgtaaaagttcaaaacccctaatcccacaagtggtgaaacccaaatcaagtccacacatgca 106  Q
    |||||| ||||||||||| ||||||||  |||||| ||||||||||  |  | | ||||| ||||||||||||||||||| |||||||||||||||||||    
T  34304600 attttgcttgacgcagcttttagggctagctgtccaaccgtaaaagccccga-ctcctaaacccacaagtggtgaaaccccaatcaagtccacacatgca 34304698  T
Q  107 tgtttttctcc 117  Q
    |||||| ||||    
T  34304699 tgttttcctcc 34304709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 12401437 - 12401550
Alignment:
Q  9 tttgtttgacgcagctcttagggctgtctgtcctaccgtaaaagttcaaaacccctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatg 108  Q
    ||||||||||||| || |||| ||||  ||||||||| ||||||  |  ||||  |||||||| |||||||||||||| ||||||||| |||||||||||    
T  12401437 tttgtttgacgcaacttttagtgctgcttgtcctaccataaaagccctgaacca-taatcccataagtggtgaaaccccaatcaagtctacacatgcatg 12401535  T
Q  109 tttttctcctaccca 123  Q
    |||| ||||||||||    
T  12401536 ttttcctcctaccca 12401550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 117
Target Start/End: Complemental strand, 33220712 - 33220605
Alignment:
Q  9 tttgtttgacgcagctcttagggctgtctgtcctaccgtaaaagttcaaaacccctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatg 108  Q
    |||| |||| |||||| |||| ||||||||||||||||||||||  |  | ||||||| ||||||||||||||||||| | |||| | ||||||||||||    
T  33220712 tttgcttgatgcagcttttagagctgtctgtcctaccgtaaaagccccga-cccctaaacccacaagtggtgaaaccccagtcaaattcacacatgcatg 33220614  T
Q  109 tttttctcc 117  Q
    |||| ||||    
T  33220613 ttttcctcc 33220605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 959686 - 959799
Alignment:
Q  9 tttgtttgacgcagctcttagggctgtctgtcctaccgtaaaagttcaaaacccctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatg 108  Q
    |||| ||||| || || |||||| ||| ||||||||||||||||  |  | | |||||||||| ||||||||||||   |||||||||||||||||||||    
T  959686 tttgcttgacacaacttttagggttgtttgtcctaccgtaaaaggcccga-cacctaatcccataagtggtgaaacttcaatcaagtccacacatgcatg 959784  T
Q  109 tttttctcctaccca 123  Q
    |||| ||||||||||    
T  959785 ttttcctcctaccca 959799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 62 - 143
Target Start/End: Complemental strand, 4206545 - 4206461
Alignment:
Q  62 cctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatgtttttctcctaccca---atacaccgtaacatccgcag 143  Q
    ||||||||||||||||||||||||| | ||||||| ||||||||||||||| |||| |||||    |||||| ||||||||||||    
T  4206545 cctaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctccaacccatttgtacaccataacatccgcag 4206461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 119
Target Start/End: Original strand, 28543481 - 28543590
Alignment:
Q  9 tttgtttgacgcagctcttagggctgtctgtcctaccgtaaaagttcaaaacccctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatg 108  Q
    |||| |||||||  || ||| ||||| ||||| |||||||||||| |  | || |||||||||||||||||||||||  | |||| ||||||||||||||    
T  28543481 tttgcttgacgcgacttttaaggctgcctgtcttaccgtaaaagtcctga-cctctaatcccacaagtggtgaaacctcagtcaaatccacacatgcatg 28543579  T
Q  109 tttttctccta 119  Q
    |||| ||||||    
T  28543580 ttttcctccta 28543590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 117
Target Start/End: Complemental strand, 17249306 - 17249199
Alignment:
Q  9 tttgtttgacgcagctcttagggctgtctgtcctaccgtaaaagttcaaaacccctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatg 108  Q
    ||||||||||||| || |||||| ||| ||||||||||||||||  |  | | || || ||||||| ||||||||||| | ||||||||||||||||||     
T  17249306 tttgtttgacgcaacttttagggttgtttgtcctaccgtaaaagcgccca-ctccgaaacccacaaatggtgaaaccccagtcaagtccacacatgcata 17249208  T
Q  109 tttttctcc 117  Q
    |||| ||||    
T  17249207 ttttcctcc 17249199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 123
Target Start/End: Original strand, 34415540 - 34415655
Alignment:
Q  7 attttgtttgacgcagctcttagggctgtctgtcctaccgtaaaagttcaaaacccctaatcccacaagtggtgaaacccaaatcaagtccacacatgca 106  Q
    |||||| |||||||||||  || || || || ||||||||||||||| |  | |||||||||| ||  |||||||||||| |||||||| |||| ||| |    
T  34415540 attttgcttgacgcagcttgtaaggatgcctatcctaccgtaaaagtcctga-cccctaatccaacgtgtggtgaaaccccaatcaagttcacaaatgta 34415638  T
Q  107 tgtttttctcctaccca 123  Q
    |||||| ||||||||||    
T  34415639 tgttttcctcctaccca 34415655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 34554227 - 34554169
Alignment:
Q  61 ccctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatgtttttctccta 119  Q
    |||||||||||||| ||||||||||| |||||| |||||| |||| |||||| ||||||    
T  34554227 ccctaatcccacaattggtgaaaccccaatcaaatccacatatgcttgttttcctccta 34554169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 120
Target Start/End: Original strand, 32115795 - 32115905
Alignment:
Q  9 tttgtttgacgcagctcttagggctgtctgtcctaccgtaaaagttcaaaacccctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatg 108  Q
    ||||||||||||| || ||| |||||  ||||||| ||||||| | |   || |||||||||| ||||| ||||||||   ||||||| |||||||||||    
T  32115795 tttgtttgacgcaacttttaaggctgcatgtcctaacgtaaaa-tgcccgacacctaatcccataagtgatgaaaccccggtcaagtctacacatgcatg 32115893  T
Q  109 tttttctcctac 120  Q
    |||| |||||||    
T  32115894 ttttcctcctac 32115905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 20693601 - 20693489
Alignment:
Q  9 tttgtttgacgcagctcttagggctgtctgtcctaccgtaaaagttcaaaacccctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatg 108  Q
    ||||||||| ||| |  ||||||| || ||| |||| ||||||| ||| | || |||||||||| |||||||||||||  ||||||| |||| | |||||    
T  20693601 tttgtttgatgcaacctttagggccgtatgttctactgtaaaagctcaga-cctctaatcccacgagtggtgaaaccctgatcaagttcacata-gcatg 20693504  T
Q  109 tttttctcctaccca 123  Q
    |||| ||||||||||    
T  20693503 ttttcctcctaccca 20693489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 123
Target Start/End: Complemental strand, 29338005 - 29337971
Alignment:
Q  89 atcaagtccacacatgcatgtttttctcctaccca 123  Q
    |||||||||||||||||||||||| ||||||||||    
T  29338005 atcaagtccacacatgcatgttttcctcctaccca 29337971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0490 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 14 - 112
Target Start/End: Original strand, 6445 - 6541
Alignment:
Q  14 ttgacgcagctcttagggctgtctgtcctaccgtaaaagttcaaaacccctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatgtttt 112  Q
    |||||||| || ||||||||||||||||||| ||||||| ||  |  |||||||||||||||||||||||||| | ||||||| ||||| |||||||||    
T  6445 ttgacgcaacttttagggctgtctgtcctacggtaaaaggtccga--ccctaatcccacaagtggtgaaaccccagtcaagtctacacaagcatgtttt 6541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 37 - 116
Target Start/End: Complemental strand, 47512 - 47434
Alignment:
Q  37 tgtcctaccgtaaaagttcaaaacccctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatgtttttctc 116  Q
    ||||||||||||||||| |  || |||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||    
T  47512 tgtcctaccgtaaaagt-ctcaatccctaatcccacaagtggtgaaaccccaatcaagtccacacttgcatttttttctc 47434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 500333 - 500469
Alignment:
Q  9 tttgtttgacgcagctcttagggctgtctgtcctaccgtaaaagttcaaaacccctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatg 108  Q
    |||| |||||||| || ||||||||||| |||||||||||||||  |  | | ||||||||||||||||||||||||  | ||||||| |||||||||||    
T  500333 tttgcttgacgcaacttttagggctgtcggtcctaccgtaaaaggcccga-cacctaatcccacaagtggtgaaacctcactcaagtctacacatgcatg 500431  T
Q  109 tttttctcctaccca---atacaccgtaacatccgcag 143  Q
    |||| || |||||||   ||||| | ||||||||||||    
T  500432 ttttccttctacccatccatacaacataacatccgcag 500469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 26 - 123
Target Start/End: Complemental strand, 35739970 - 35739875
Alignment:
Q  26 ttagggctgtctgtcctaccgtaaaagttcaaaacccctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatgtttttctcctaccca 123  Q
    |||||| ||||||||||||||||||||  |  |  || ||||||||| ||||||||||||| | ||||||||||||||||||||||| ||||||||||    
T  35739970 ttagggatgtctgtcctaccgtaaaaggcccga--ccttaatcccactagtggtgaaaccccagtcaagtccacacatgcatgttttcctcctaccca 35739875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 24125126 - 24125246
Alignment:
Q  1 ttggcaattttgtttgacgcagctcttagggctgtctgtcctaccgtaaaagttcaaaacccctaatcccacaagtggtgaaacccaaatcaagtccaca 100  Q
    ||||| |||||| |||| |||||| |||||||||  ||||| ||||||||||  ||  || | ||||||||||||||||||||||| | ||||||| |||    
T  24125126 ttggccattttgcttgatgcagcttttagggctgcttgtcccaccgtaaaagg-cacgacgcataatcccacaagtggtgaaaccccagtcaagtctaca 24125224  T
Q  101 catgcatgtttttctcctaccc 122  Q
    ||||||||||||  ||||||||    
T  24125225 catgcatgttttcttcctaccc 24125246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 59 - 123
Target Start/End: Complemental strand, 25021766 - 25021702
Alignment:
Q  59 acccctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatgtttttctcctaccca 123  Q
    |||||||||||||||||||||||||| |   ||||||||||||||||||||||| ||||||||||    
T  25021766 acccctaatcccacaagtggtgaaactccggtcaagtccacacatgcatgttttcctcctaccca 25021702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 123
Target Start/End: Original strand, 39434822 - 39434886
Alignment:
Q  59 acccctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatgtttttctcctaccca 123  Q
    |||||||| ||||||||||||||||||| | |||||| |||||||||||||||| |||| |||||    
T  39434822 acccctaaacccacaagtggtgaaaccccagtcaagtacacacatgcatgttttcctccaaccca 39434886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 58 - 121
Target Start/End: Original strand, 10189697 - 10189760
Alignment:
Q  58 aacccctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatgtttttctcctacc 121  Q
    ||||||||||| |||||| ||||||| || |||||||||||||||| |||||||| ||||||||    
T  10189697 aacccctaatctcacaagcggtgaaatcccaatcaagtccacacatacatgttttcctcctacc 10189760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 65 - 146
Target Start/End: Complemental strand, 39671132 - 39671049
Alignment:
Q  65 aatcccacaagtggtgaaacccaaatcaagtccacacatgcatgtttttctcctaccca---atacaccgtaacatccgcagacc 146  Q
    |||| ||||| ||||||||| ||  |||||||||||||||||| |||||||||||||||   | |||||||||||||||||||||    
T  39671132 aatctcacaaatggtgaaactcag-tcaagtccacacatgcatatttttctcctacccatctagacaccgtaacatccgcagacc 39671049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 103
Target Start/End: Original strand, 8619925 - 8620013
Alignment:
Q  14 ttgacgcagctcttagggctgtctgtcctaccgtaaaagttcaaaacccctaatcccacaagtggtgaaacccaaatcaagtccacacat 103  Q
    |||||||| || |||||||||||||| ||| ||||||||| ||  | | |||||||||||||||||||||||| | |||||| |||||||    
T  8619925 ttgacgcaacttttagggctgtctgttctatcgtaaaagt-cacgatctctaatcccacaagtggtgaaaccccagtcaagttcacacat 8620013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 65 - 123
Target Start/End: Original strand, 40839713 - 40839770
Alignment:
Q  65 aatcccacaagtggtgaaacccaaatcaagtccacacatgcatgtttttctcctaccca 123  Q
    |||||||||||||| ||||| | ||||||||| ||||||||||||||| ||||||||||    
T  40839713 aatcccacaagtgg-gaaactccaatcaagtctacacatgcatgttttcctcctaccca 40839770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 3188126 - 3188182
Alignment:
Q  61 ccctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatgtttttctcc 117  Q
    |||||| ||||||||||||||||||| |  |||| ||||||||||||||||| ||||    
T  3188126 ccctaaacccacaagtggtgaaaccccacacaaggccacacatgcatgttttcctcc 3188182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 123
Target Start/End: Original strand, 8115971 - 8116030
Alignment:
Q  64 taatcccacaagtggtgaaacccaaatcaagtccacacatgcatgtttttctcctaccca 123  Q
    |||||| |||||||||||||||  | |||||| |||| ||||||||||||||| ||||||    
T  8115971 taatcctacaagtggtgaaaccttagtcaagttcacaaatgcatgtttttctcttaccca 8116030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 37517200 - 37517313
Alignment:
Q  9 tttgtttgacgcagctcttagggctgtctgtcctaccgtaaaagttcaaaacccctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatg 108  Q
    |||| |||| |||||| |||| |||||||||||||| ||||||| ||   || |||||||| |||||||| ||||||| | ||||||| |||||  |||     
T  37517200 tttgcttgatgcagcttttagagctgtctgtcctacggtaaaaggtc-ctacgcctaatccaacaagtggcgaaaccccagtcaagtctacacaaacata 37517298  T
Q  109 tttttctcctaccca 123  Q
    |||| | ||||||||    
T  37517299 ttttccacctaccca 37517313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 123
Target Start/End: Original strand, 8390326 - 8390359
Alignment:
Q  90 tcaagtccacacatgcatgtttttctcctaccca 123  Q
    |||||| |||||||||||||||||||||||||||    
T  8390326 tcaagttcacacatgcatgtttttctcctaccca 8390359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 112
Target Start/End: Complemental strand, 11611195 - 11611147
Alignment:
Q  64 taatcccacaagtggtgaaacccaaatcaagtccacacatgcatgtttt 112  Q
    ||||||||| |||||||||||||   | |||||||||||||||||||||    
T  11611195 taatcccacgagtggtgaaacccctgtgaagtccacacatgcatgtttt 11611147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1768 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold1768
Description:

Target: scaffold1768; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 185 - 72
Alignment:
Q  9 tttgtttgacgcagctcttagggctgtctgtcctaccgtaaaagttcaaaacccctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatg 108  Q
    |||| ||||||||| | ||||||||| ||||||||| |||||||  |  | | | ||||||||||||||||||||||| | ||||||| | |||||||||    
T  185 tttgcttgacgcagtttttagggctgcctgtcctacagtaaaaggcccga-cacttaatcccacaagtggtgaaaccccagtcaagtctatacatgcatg 87  T
Q  109 tttttctcctaccca 123  Q
    |||| ||||||||||    
T  86 ttttcctcctaccca 72  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 59 - 116
Target Start/End: Original strand, 49570 - 49626
Alignment:
Q  59 acccctaatcccacaagtggtgaaacccaaatcaagtccacacatgcatgtttttctc 116  Q
    |||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||    
T  49570 acccctaatcccacaagtagtgaaactcaa-tcaagtccacacatgcatgtttttctc 49626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 16232 - 16286
Alignment:
Q  1 ttggcaattttgtttgacgcagctcttagggctgtctgtcctaccgtaaaagttc 55  Q
    ||||| |||||||||||||||||| |||| | ||||||||||||  |||||||||    
T  16232 ttggccattttgtttgacgcagcttttagcgttgtctgtcctactataaaagttc 16286  T

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Target: scaffold0148 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 123
Target Start/End: Original strand, 33407 - 33470
Alignment:
Q  62 cctaatcccacaagtggtgaaacccaaatcaagtccacacatgc--atgtttttctcctaccca 123  Q
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T  33407 cctaatcccataagtggtgaaaccccaatcaagtttgcacatgcatatgttttcctcctaccca 33470  T

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