View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7156_low_1 (Length: 312)
Name: NF7156_low_1
Description: NF7156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7156_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 12 - 295
Target Start/End: Complemental strand, 8253549 - 8253266
Alignment:
| Q |
12 |
aacctgtgtaggacaataataaaactaccttgtagaaattataagctgagtctactaaaaggtcagagtatgaaggaaaatcataattaacttgtctcac |
111 |
Q |
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| T |
8253549 |
aacccgtgtaggataataataaaactaccttgtagaaattataagctgagtctactaaaaggtcagagtatgaaggaaaatcataattaacttgtctcgc |
8253450 |
T |
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| Q |
112 |
atgaaacaagaagtatgtgttagaaatatcattgcttcctactagcacaaaataaatactattggctaagatgaagtttgttctatcttcaccaactatt |
211 |
Q |
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| T |
8253449 |
atgaaacaagaagtatgtgttagaaatatcattgcttcctactagcacaaaataaatactattggctaagatgaagtttgttctatcttcaccaactatt |
8253350 |
T |
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| Q |
212 |
cctttcagcttcacaatatattctttgaataattctatctgggcagacattgatatagctgcctgcttattatataaggaaaca |
295 |
Q |
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| T |
8253349 |
cctttcagcttcacaatatattctttgaataattctatctgggcagacattgatatagctgcctgcttattatataaggaaaca |
8253266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 37 - 276
Target Start/End: Complemental strand, 8243886 - 8243647
Alignment:
| Q |
37 |
taccttgtagaaattataagctgagtctactaaaaggtcagagtatgaaggaaaatcataattaacttgtctcacatgaaacaagaagtatgtgttagaa |
136 |
Q |
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| T |
8243886 |
tacctggtagaaatttaaagctgagttgaccaaaaggtcagagtatgtaggaaagtcatattgtgcttgtcttagatgagacaagtagtacgtgttagaa |
8243787 |
T |
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| Q |
137 |
atatcattgcttcctactagcacaaaataaatactattggctaagatgaagtttgttctatcttcaccaactattcctttcagcttcacaatatattctt |
236 |
Q |
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| T |
8243786 |
atgtcattgcttcctagtaccacaagaaaaagactattggctaagatgaaatttgctctatcttcaccaaatagtcctttaagcctcacaatgtaatctt |
8243687 |
T |
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| Q |
237 |
tgaataattctatctgggcagacattgatatagctgcctg |
276 |
Q |
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| T |
8243686 |
tgaataagtctagctggccagacatagatatagctacctg |
8243647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 169 - 240
Target Start/End: Complemental strand, 8289009 - 8288938
Alignment:
| Q |
169 |
actattggctaagatgaagtttgttctatcttcaccaactattcctttcagcttcacaatatattctttgaa |
240 |
Q |
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| T |
8289009 |
actattggccagtatgaagtttgttctttcctcaccaacaatgcctttcaacttcccaatgtattctttgaa |
8288938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 207
Target Start/End: Complemental strand, 8233114 - 8233024
Alignment:
| Q |
117 |
acaagaagtatgtgttagaaatatcattgcttcctactagcacaaaataaatactattggctaagatgaagtttgttctatcttcaccaac |
207 |
Q |
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| T |
8233114 |
acaagaaatatgtgttggaaatatcattactgcccaataccacaaggaaaagactatttgccaagatgaagtttgttctgtcttctccaac |
8233024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 8271271 - 8271199
Alignment:
| Q |
169 |
actattggctaagatgaagtttgttctatcttcaccaactattcctttcagcttcacaatatattctttgaat |
241 |
Q |
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| T |
8271271 |
actattggctatgatgaactttgttctattctctccaacgagtgcattaagcttcccaatatattctttgaat |
8271199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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