View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7157_low_4 (Length: 287)
Name: NF7157_low_4
Description: NF7157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7157_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 21769453 - 21769170
Alignment:
| Q |
1 |
acttggtatagattaagtaatgtattcgtccgcaaaattataannnnnnnggaatattattat---aaatttaatgatatttcatagaaaattgaccaaa |
97 |
Q |
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||||||||| ||||||| |||||||| ||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
21769453 |
acttggtatggattaaggaatgtatttgtccgcataattataatttttt-ggaatattattattataaatttaatgatatttcatagaaaattgaccaaa |
21769355 |
T |
|
| Q |
98 |
tcacttgagggaaaataaa-cctggctacagctgcacaaaaatcttccatcaaacgcccaagtcaaactggtaacctgaaggatgtaaaaatgcagaaat |
196 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21769354 |
tcacttgagggaaaataaaacctggctacagctgcacaaaaatcttccatcaaacgcccaagtcaaactggtaacctgaaggatgtaaaaatgcagaaat |
21769255 |
T |
|
| Q |
197 |
caatagaggaatacattctgaagtcttcaaccaactccagnnnnnnncacggaaagactaaacttacagcataatgatgtccatc |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||| |
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| T |
21769254 |
caatagaggaatacattctgaagtcttcaaccaactccagaaaaaaacacggaaagactaaacttacagcataataatgtgcatc |
21769170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 82 - 235
Target Start/End: Original strand, 32923597 - 32923751
Alignment:
| Q |
82 |
tagaaaattgaccaaatcacttgagggaaaataaa-cctggctacagctgcacaaaaatcttccatcaaacgcccaagtcaaactggtaacctgaaggat |
180 |
Q |
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||||||||||||| | | ||||||||||||||||| |||||||||||||||||||||| |||||| |||| |||||||| || | |||||||||||||| |
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| T |
32923597 |
tagaaaattgaccgagtaacttgagggaaaataaaacctggctacagctgcacaaaaaccttccaccaaatgcccaagttaatccagtaacctgaaggat |
32923696 |
T |
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| Q |
181 |
gtaaaaatgcagaaatcaatagaggaatacattctgaagtcttcaaccaactcca |
235 |
Q |
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|||||||| ||||||||||||||||||||| || ||||||||||||| ||||| |
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| T |
32923697 |
ataaaaatggagaaatcaatagaggaatacaacctcaagtcttcaaccatctcca |
32923751 |
T |
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