View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7157_low_6 (Length: 246)
Name: NF7157_low_6
Description: NF7157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7157_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 26887244 - 26887479
Alignment:
| Q |
1 |
aaaagaaatgtcatacccattttcatcttgcacactatactgatgctctatttaggagtcatgaagaaaggcttgattctaatggtggaaggatcaaaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
26887244 |
aaaagaaatgtcatacccattttcatcttgcacactatactgatgctctatttaggagtcatgaagaaagacttgattctaatggtggaaggatcaaaga |
26887343 |
T |
|
| Q |
101 |
gcaaaatgtagctaaatttatatcaacactagctggttgaaacaatgaaaaactaatggtcatgtcacatgctacttcaatagacact--actacactag |
198 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||| |
|
|
| T |
26887344 |
gcaaaatgtagctaagtttatatcaacactagctggttgaaacaatgaaaaactaatggtcatggcgcatgctacttcaatagacactacactacactag |
26887443 |
T |
|
| Q |
199 |
cttttgttgc---tgttaatcaaattggtggtgatg |
231 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |
|
|
| T |
26887444 |
cttttgttgctgttgttaatcaaattggtggtgatg |
26887479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 51855180 - 51854945
Alignment:
| Q |
1 |
aaaagaaatgtcatacccattttcatcttgcacactatactgatgctctatttaggagtcatgaagaaaggcttgattctaatggtggaaggatcaaaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
51855180 |
aaaagaaatgtcatacccattttcatcttgcacactatactgatgctctatttaggagtcatgaagaaagacttgattctaatggtggaaggatcaaaga |
51855081 |
T |
|
| Q |
101 |
gcaaaatgtagctaaatttatatcaacactagctggttgaaacaatgaaaaactaatggtcatgtcacatgctacttcaatagacacta--ctacactag |
198 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
51855080 |
gcaaaatgtagctaagtttatatcaacactagctggttgaaaaaatgaaaaactaatggtcatggcacatgctacttcaatagacactaccctacactag |
51854981 |
T |
|
| Q |
199 |
cttttgttgc---tgttaatcaaattggtggtgatg |
231 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |
|
|
| T |
51854980 |
cttttgttgctgttgttaatcaaattggtggtgatg |
51854945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 35043301 - 35043384
Alignment:
| Q |
1 |
aaaagaaatgtcatacccattttcatcttgcacactatactgatgctctatttaggagtcatgaagaaaggcttgattctaatg |
84 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||| |
|
|
| T |
35043301 |
aaaagaaatgtcaaactcattttcatcttgcacactatactgatgctctatttaggagccatgaagaaagacttaattctaatg |
35043384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 8944415 - 8944180
Alignment:
| Q |
1 |
aaaagaaatgtcatacccattttcatcttgcacactatactgatgctctatttaggagtcatgaagaaaggcttgattctaatggtggaaggatcaaaga |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
8944415 |
aaaagaaatgtaatacccattttcatcttgcacactatactgatgctctatttaggagtcatgaagaaatacttgattctaatggtggaaggatcaaaga |
8944316 |
T |
|
| Q |
101 |
gcaaaatgtagctaaatttatatcaacactagctggttgaaacaatgaaaaactaatggtcatgtcacatgctacttcaatagacact--actacactag |
198 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
8944315 |
gcaaaatgtagctaagtttatatcaacactagctggttgaaacaatgaaaaactaatggtcatggcacatgctacttcaatagacactacactacactag |
8944216 |
T |
|
| Q |
199 |
cttttgttgc---tgttaatcaaattggtggtgatg |
231 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |
|
|
| T |
8944215 |
cttttgttgctgttgttaatcaaattggtggtgatg |
8944180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 82 - 231
Target Start/End: Complemental strand, 21989075 - 21988923
Alignment:
| Q |
82 |
atggtggaaggatcaaagagcaaaatgtagctaaatttatatcaacactagctggttgaaacaatgaaaaactaatggtcatgtcacatgctacttcaat |
181 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||||| ||||||||||| ||||| | |||||||| ||||| ||| || ||||||||||| |
|
|
| T |
21989075 |
atggtggaaggatcaaagagtcaaatgtagctaagtttatatcagcactagctggtggaaactaagaaaaactgatggttatggcatatgctacttcagc |
21988976 |
T |
|
| Q |
182 |
agacactactacactagcttttgttgc---tgttaatcaaattggtggtgatg |
231 |
Q |
| |
|
|||||||| |||||| |||| ||||| ||||||||||| ||||||||||| |
|
|
| T |
21988975 |
ggacactacgacactaactttagttgctgttgttaatcaaactggtggtgatg |
21988923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University