View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7158_low_1 (Length: 256)
Name: NF7158_low_1
Description: NF7158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7158_low_1 |
 | |
|
| [»] scaffold0024 (2 HSPs) |
| |
|
Alignment Details
Target: scaffold0024 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 16 - 256
Target Start/End: Complemental strand, 77636 - 77396
Alignment:
| Q |
16 |
ataatactacaagtgtgaaaatttaannnnnnnatttggtatacttcaaaactaatccataggtttatttaattgaaaatttgcatcttaataaattggg |
115 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
77636 |
ataatactacaagtgtgaaaatttaatttttttatttggtatacttcaaaactaatccataggtttatttaattgaaaatttgcatcttaataaattggc |
77537 |
T |
|
| Q |
116 |
ttttcaggctgcagctagatatgtacacagtactttaagaaactcaagtacaacaatctcaaacatcattgggccagtggagcaaatggctttggctaat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
77536 |
ttttcaggctgcagctagatatgtacacagtactttaagaaactcaagtacaacaatctcaaacatcattgggccagtggagcaaatggctttggctaat |
77437 |
T |
|
| Q |
216 |
catccagttaaaggtctatacttcatggttgttggtccacc |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
77436 |
catccagttaaaggtctatacttcatggttgttggtccacc |
77396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 147 - 256
Target Start/End: Complemental strand, 69988 - 69879
Alignment:
| Q |
147 |
actttaagaaactcaagtacaacaatctcaaacatcattgggccagtggagcaaatggctttggctaatcatccagttaaaggtctatacttcatggttg |
246 |
Q |
| |
|
||||| ||||| ||||| |||||||| || ||||| ||||| ||| ||||||||||||||||||||||||||||| ||||||| ||||| || ||||||| |
|
|
| T |
69988 |
actttgagaaattcaagcacaacaatttccaacataattggaccaatggagcaaatggctttggctaatcatccaattaaaggactatattttatggttg |
69889 |
T |
|
| Q |
247 |
ttggtccacc |
256 |
Q |
| |
|
|||||||||| |
|
|
| T |
69888 |
ttggtccacc |
69879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University