View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7158_low_11 (Length: 212)

Name: NF7158_low_11
Description: NF7158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7158_low_11
NF7158_low_11
[»] chr6 (2 HSPs)
chr6 (1-212)||(5542628-5542839)
chr6 (6-58)||(22534564-22534616)
[»] chr7 (2 HSPs)
chr7 (2-58)||(28598099-28598155)
chr7 (2-58)||(6056246-6056302)
[»] scaffold0252 (1 HSPs)
scaffold0252 (1-61)||(13380-13440)
[»] chr3 (3 HSPs)
chr3 (2-94)||(18720901-18720993)
chr3 (1-61)||(49525060-49525120)
chr3 (18-61)||(1834414-1834457)
[»] chr1 (3 HSPs)
chr1 (5-61)||(13075896-13075952)
chr1 (2-58)||(323772-323828)
chr1 (2-57)||(17975292-17975347)
[»] chr4 (3 HSPs)
chr4 (2-61)||(39251572-39251631)
chr4 (2-96)||(21163276-21163369)
chr4 (2-96)||(40727225-40727319)
[»] chr5 (1 HSPs)
chr5 (2-96)||(32378206-32378300)
[»] chr2 (1 HSPs)
chr2 (9-61)||(25538166-25538218)
[»] chr8 (1 HSPs)
chr8 (5-61)||(8670180-8670236)


Alignment Details
Target: chr6 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 5542628 - 5542839
Alignment:
Q  1 cttgctagggcggcatattcttggtctagtcaccatgtttttgagatttgtcctccttgtactaaacctcttttaaccaatgatatcagttaagttggtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5542628 cttgctagggcggcatattcttggtctagtcaccatgtttttgagatttgtcctccttgtactaaacctcttttaaccaatgatatcagttaagttggtt 5542727  T
Q  101 tcggtnnnnnnnnnnnncgtgtgagctaaaattcaaaccctaccactttcctaattctgttttcaaagtaagaatagatgcataacacattgtgagcaac 200  Q
    |||||             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5542728 tcggtaaaaaaaaaaaaagtgtgagctaaaattcaaaccctaccactttcctaattctgttttcaaagtaagaatagatgcataacacattgtgagcaac 5542827  T
Q  201 tggtgtgaacat 212  Q
    ||||||||||||    
T  5542828 tggtgtgaacat 5542839  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 58
Target Start/End: Original strand, 22534564 - 22534616
Alignment:
Q  6 tagggcggcatattcttggtctagtcaccatgtttttgagatttgtcctcctt 58  Q
    ||||||||||| |||||||   | || ||||||||||||||||||||||||||    
T  22534564 tagggcggcattttcttggctcaatcgccatgtttttgagatttgtcctcctt 22534616  T

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Target: chr7 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 28598155 - 28598099
Alignment:
Q  2 ttgctagggcggcatattcttggtctagtcaccatgtttttgagatttgtcctcctt 58  Q
    ||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||    
T  28598155 ttgctagggcggcatattcttagcctagtcgccatgtttttgagatttgtcctcctt 28598099  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 6056302 - 6056246
Alignment:
Q  2 ttgctagggcggcatattcttggtctagtcaccatgtttttgagatttgtcctcctt 58  Q
    ||||||||||||||| ||||||| |||||| |||||||||| | |||||||||||||    
T  6056302 ttgctagggcggcatgttcttggcctagtcgccatgttttttaaatttgtcctcctt 6056246  T

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Target: scaffold0252 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 13380 - 13440
Alignment:
Q  1 cttgctagggcggcatattcttggtctagtcaccatgtttttgagatttgtcctccttgta 61  Q
    |||||||||||||| | ||||||| ||||||||| ||| ||||||||||||||||||||||    
T  13380 cttgctagggcggcctgttcttgggctagtcaccgtgtctttgagatttgtcctccttgta 13440  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 94
Target Start/End: Original strand, 18720901 - 18720993
Alignment:
Q  2 ttgctagggcggcatattcttggtctagtcaccatgtttttgagatttgtcctccttgtactaaacctcttttaaccaatgatatcagttaag 94  Q
    |||||| |||||||| ||||||| ||| || ||||||||||||||||||||||||||||| | |  || ||||||  |||||||||| |||||    
T  18720901 ttgctatggcggcatgttcttggcctaatcgccatgtttttgagatttgtcctccttgtattgacactgttttaattaatgatatcaattaag 18720993  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 49525120 - 49525060
Alignment:
Q  1 cttgctagggcggcatattcttggtctagtcaccatgtttttgagatttgtcctccttgta 61  Q
    |||||||||||||  | ||||||| ||||||||||| ||||||||||||||||||||||||    
T  49525120 cttgctagggcggtctgttcttggactagtcaccatatttttgagatttgtcctccttgta 49525060  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 1834457 - 1834414
Alignment:
Q  18 ttcttggtctagtcaccatgtttttgagatttgtcctccttgta 61  Q
    ||||||||||||||| |||||| ||||||||| |||||||||||    
T  1834457 ttcttggtctagtcaacatgttattgagatttatcctccttgta 1834414  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 13075952 - 13075896
Alignment:
Q  5 ctagggcggcatattcttggtctagtcaccatgtttttgagatttgtcctccttgta 61  Q
    |||||||||||| ||| | | |||||| |||||||||||||||||||||||||||||    
T  13075952 ctagggcggcatgttcatagcctagtccccatgtttttgagatttgtcctccttgta 13075896  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 323828 - 323772
Alignment:
Q  2 ttgctagggcggcatattcttggtctagtcaccatgtttttgagatttgtcctcctt 58  Q
    |||||| ||| |||||||||||| |||||| | ||||||||||||||||| ||||||    
T  323828 ttgctaaggccgcatattcttggcctagtcgctatgtttttgagatttgttctcctt 323772  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 17975292 - 17975347
Alignment:
Q  2 ttgctagggcggcatattcttggtctagtcaccatgtttttgagatttgtcctcct 57  Q
    ||||||||| | ||| || |||| |||||| |||||||||||||||||||||||||    
T  17975292 ttgctagggagacatgtttttggcctagtcgccatgtttttgagatttgtcctcct 17975347  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 39251631 - 39251572
Alignment:
Q  2 ttgctagggcggcatattcttggtctagtcaccatgtttttgagatttgtcctccttgta 61  Q
    |||||||||  |||| ||||||| |||| | |||||||||||||||||||||||||||||    
T  39251631 ttgctagggtagcatgttcttggcctagacgccatgtttttgagatttgtcctccttgta 39251572  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 2 - 96
Target Start/End: Complemental strand, 21163369 - 21163276
Alignment:
Q  2 ttgctagggcggcatattcttggtctagtcaccatgtttttgagatttgtcctccttgtactaaacctcttttaaccaatgatatcagttaagtt 96  Q
    |||||| |||| ||| ||||||  ||||||||||||||||| ||||| |||||||||||| |  | || ||||||  ||||||||||||||||||    
T  21163369 ttgctaaggcgacatgttcttgacctagtcaccatgttttttagattcgtcctccttgta-ttgatcttttttaattaatgatatcagttaagtt 21163276  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 96
Target Start/End: Original strand, 40727225 - 40727319
Alignment:
Q  2 ttgctagggcggcatattcttggtctagtcaccatgtttttgagatttgtcctccttgtactaaacctcttttaaccaatgatatcagttaagtt 96  Q
    ||||||||| | ||| || |||| |||||| |||||| ||||||||||||||||||| || |||  || ||||||  |||||||| | |||||||    
T  40727225 ttgctagggagacatgtttttggcctagtcgccatgtatttgagatttgtcctccttatattaatgctattttaattaatgatataaattaagtt 40727319  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 2 - 96
Target Start/End: Original strand, 32378206 - 32378300
Alignment:
Q  2 ttgctagggcggcatattcttggtctagtcaccatgtttttgagatttgtcctccttgtactaaacctcttttaaccaatgatatcagttaagtt 96  Q
    |||||| | |||||| ||||||| |||||| ||||||||||||||||| |||||| |||| | |  || ||||||  | ||||||||||||||||    
T  32378206 ttgctatgacggcatgttcttggcctagtcgccatgtttttgagatttttcctccctgtattgacactattttaattactgatatcagttaagtt 32378300  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 25538166 - 25538218
Alignment:
Q  9 ggcggcatattcttggtctagtcaccatgtttttgagatttgtcctccttgta 61  Q
    |||||||| ||||||| |||||| |||||||||||||||||| || |||||||    
T  25538166 ggcggcatgttcttggcctagtcgccatgtttttgagatttgccccccttgta 25538218  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 8670236 - 8670180
Alignment:
Q  5 ctagggcggcatattcttggtctagtcaccatgtttttgagatttgtcctccttgta 61  Q
    |||||||||| | ||||||| ||||||||| | | ||||||||||||| ||||||||    
T  8670236 ctagggcggcctgttcttggactagtcaccgtatctttgagatttgtcttccttgta 8670180  T

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