View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7158_low_12 (Length: 206)
Name: NF7158_low_12
Description: NF7158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7158_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 7e-82; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 31 - 204
Target Start/End: Complemental strand, 4744222 - 4744049
Alignment:
| Q |
31 |
cttccttttgattggctatacccaaaaagttagaattggtttcaaaatcaaacttttactacttaacttacactctaagaacaacaacaataatattggt |
130 |
Q |
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| T |
4744222 |
cttccttttgattggctatacccaaaaagttagaattggtttcaaaatcaaacttttactacttaacttacactctaagaacaacaagaataatattggt |
4744123 |
T |
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| Q |
131 |
ttcaaaataaaaacaaaggaaacacactccacaatcattgtctttgttttgaccctcctccttctccttcttct |
204 |
Q |
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| T |
4744122 |
ttcaaaataaaaacaaaggaaacacacttcacaaacattgtctttgttttgagcctcctccttctccctcttct |
4744049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 95 - 201
Target Start/End: Complemental strand, 3676363 - 3676257
Alignment:
| Q |
95 |
aacttacactctaagaacaacaacaataatattggtttcaaaataaaaacaaaggaaacacactccacaatcattgtctttgttttgaccctcctccttc |
194 |
Q |
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| T |
3676363 |
aacttaaactccaaaaacaacaacattaaaattggtttcaaaataaaaacaaaggaaacacattccacaaacattgtttttgttttgagcctcctcttcc |
3676264 |
T |
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| Q |
195 |
tccttct |
201 |
Q |
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| T |
3676263 |
tccttct |
3676257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 56 - 204
Target Start/End: Complemental strand, 4750924 - 4750777
Alignment:
| Q |
56 |
aaagttagaattggtttcaaaatcaaacttt-----tactacttaacttacactctaagaacaacaacaataatattggtttcaaaataaaaacaaagga |
150 |
Q |
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| T |
4750924 |
aaagttagaaatggtttcaaaatcaaactttaattttactactaaacttacactctaagaacaacaaccttaatattagtttc-----aaaaacaaagga |
4750830 |
T |
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| Q |
151 |
aacacactccacaatcattgtctttgttttgaccctcctccttctccttcttct |
204 |
Q |
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| T |
4750829 |
aacacactccagagacattgtc-ttgttttgagcctcctccttcttctacttct |
4750777 |
T |
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