View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7158_low_2 (Length: 550)
Name: NF7158_low_2
Description: NF7158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7158_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 93 - 528
Target Start/End: Complemental strand, 52747846 - 52747401
Alignment:
| Q |
93 |
gagtagtgttgttggaagggtatgttgatgaagatatttgtaggacgaaaagcctaacagatgaggatcttgatgagttgaagggatgtttagatcttgg |
192 |
Q |
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| T |
52747846 |
gagtagtgttgttggaagggtatgttgatgaagatatttgtaggacgaaaagcctaacagatgaggatcttgatgagttgaagggatgtttagatcttgg |
52747747 |
T |
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| Q |
193 |
ttttgggttcagttatgatgagattcctgaactatgtaacacactcccagcacttgagttgtgttattcaatgtcaaacagtacttgttctcctgattgg |
292 |
Q |
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| T |
52747746 |
ttttgggttcagttatgatgagatacctgaactatgtaacacactcccagcacttgagttgtgttattcaatgtcaaacagtacttgttctcctgattgg |
52747647 |
T |
|
| Q |
293 |
aagatatcaagtccaggtgatcatcctgaagatgttaaagcaagattgaaatattgggcacaggctggtgcgtgtactgttaaactatgca----gctaa |
388 |
Q |
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| T |
52747646 |
aagatctcaagtccaggtgatcatcctgaagatgttaaagcaagattgaaatattgggcacaggctgttgcgtgtactgttaaactatgcagctagctaa |
52747547 |
T |
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| Q |
389 |
ctatcgatattgatgc------agtgggagagacatacagaacataaaaagggtgttgttgtgttgtttaccttcagttaggtaggtaatttgaattaag |
482 |
Q |
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| T |
52747546 |
ctatcgatattgatgcattgggagtcggagagacatacagaacat-aaaagggtgttgttctgttgtttaccttcaggtaggtaggtaatttgaattaag |
52747448 |
T |
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| Q |
483 |
ctacctacctagcttcgtatcctagcatcaatt-aattccatgttca |
528 |
Q |
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| T |
52747447 |
ctacctacctagcttcgtaccctagcatcaattaaattccatgttca |
52747401 |
T |
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