View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7158_low_3 (Length: 464)
Name: NF7158_low_3
Description: NF7158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7158_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 14 - 448
Target Start/End: Complemental strand, 6496433 - 6496002
Alignment:
| Q |
14 |
ttcttcacttctccatcaacataagtgctgttcaaatcaatacacaagtttgattgactctaaaggcatcaagtgagagtcgtttaattcatcaagcaag |
113 |
Q |
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| T |
6496433 |
ttcttcacttctccatcaacataagtgctgttcaaattaatgcacaagtttgattgactctaaaggcatcaagtgagagtcgtttaattcatcaagcaag |
6496334 |
T |
|
| Q |
114 |
nnnnnnnaaggtttacaacggtatcgcagctgcgacataaaagttttagaggtctttacattggtatcacaactgcaattgtagccgcatattttcgtta |
213 |
Q |
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| T |
6496333 |
tttttttaaggtttacaacggtatcgcagctgcgacataaaagttttagaggtctttacatcggtatcacaactgcaattgtagccgcatatttacgtta |
6496234 |
T |
|
| Q |
214 |
taataaggtgttttgatgtaacatagtaaagggaaaaaggaagtataccatctatagaatcctctaagatgctcattgaggataccagaaaactcaatca |
313 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6496233 |
taataaggtgttca-atgtaacatagtaaagggaaaaaggaagta--ccatctatagaatcctctaagatgctcattgaggataccagaaaactcaatca |
6496137 |
T |
|
| Q |
314 |
ccaaaactccttctccatcaaaaagtgcttcatcaaacaccaagactaatatctcatcctcttcatccaccacaacatcacttggagtatactgttnnnn |
413 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6496136 |
ccaaaactccttctccatcaaaaagtgcttcgtcaaacaccaagactaatatctcatcctcttcatccaccacaacatcacttggagtatactgttaaaa |
6496037 |
T |
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| Q |
414 |
nnntcaatcatagccacataaaaagtcaaccaaac |
448 |
Q |
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||||||| |||||||||||||||||||||||| |
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| T |
6496036 |
aaatcaatcaaagccacataaaaagtcaaccaaac |
6496002 |
T |
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