View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7158_low_4 (Length: 411)
Name: NF7158_low_4
Description: NF7158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7158_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 16 - 395
Target Start/End: Complemental strand, 6254323 - 6253944
Alignment:
| Q |
16 |
atcagactcaaaaaagatcagacaagatcgagaagattgcaaaatgaaatttccacctgaaagaagagatactattggatacttttaggtggacgacaac |
115 |
Q |
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| T |
6254323 |
atcagactcaaaaaagatcagacaagatcgagaagattgcaaaatgaaatttccacctgaaagaagagatactattggatacttttaggtggacgacaac |
6254224 |
T |
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| Q |
116 |
atcataactggtattgatgaagagcatattgatgacaaacagaaattgttatccaacagccccaagtgatgtaaatgttgcttggcgactaaatggttga |
215 |
Q |
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| T |
6254223 |
atcataactggtattgatgaagagcatattgatgacaaacagaaattgttatccaacagccccaagtgatgtaaatgttgcttggtgactaaatggttga |
6254124 |
T |
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| Q |
216 |
aggagaaattgagtggaaaaaatgttgttcatgatgatacttatggaattcaaaaagtagatggtgaaaaactagccatcaaggatcaatcatgaagtat |
315 |
Q |
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| T |
6254123 |
aggagaaattgagtggaaaaaatgttgttcatgatgatacttatggaattcaaaaagtagatggtgaaaaactagccatcaaggatcaatcatgaagtat |
6254024 |
T |
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| Q |
316 |
gtgaatcttgtacatgtttcttcataggaatccaatggctgtttagtcgaagaagttcacagtttggatgataatatttg |
395 |
Q |
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| T |
6254023 |
gtgaatcttgtacatgtttcttcataggaatccaatggctgtttagtcgaagaagttcacagtttggatgataatatttg |
6253944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 288 - 336
Target Start/End: Original strand, 6253747 - 6253795
Alignment:
| Q |
288 |
tagccatcaaggatcaatcatgaagtatgtgaatcttgtacatgtttct |
336 |
Q |
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| T |
6253747 |
tagccatcaaggatcaatcatgaagtatgtgaatcttgtagatgtttct |
6253795 |
T |
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