View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7158_low_5 (Length: 400)
Name: NF7158_low_5
Description: NF7158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7158_low_5 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 11 - 400
Target Start/End: Original strand, 6315319 - 6315709
Alignment:
| Q |
11 |
gtaggaacagagacttgttgggcagatgg-atccctttacaaatgaagatgaagtgatggctttatggagggttatggagtgagcaaatagtacggggac |
109 |
Q |
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| T |
6315319 |
gtagcaacggagacttgttgggcagatgggatccctttacaaatgaagatgaagtgacggctttatggagggttatggagtgagcaaatagtacggggac |
6315418 |
T |
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| Q |
110 |
aattgtgactgactgcaaattggttgttaatacaatggctcatagtttttggctataactgagtttagatccatgatttcaaaatggagaggccgtatta |
209 |
Q |
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| T |
6315419 |
aattgtgactgactgcaaattggttgttaatacaatggctcatagtttttggctataactgagtttagatccatgatttcaaaatggagaggccgtatta |
6315518 |
T |
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| Q |
210 |
atgtaaaaccaaacttaagggttaattttataaggatgcaagccaatcaagttgctcatccgttagcaaaagtatctcatttactgctagtcacaaaatt |
309 |
Q |
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| T |
6315519 |
atgtaaaaccaaacttaagggttaattttataaggatgcaagccaatcaagttgctcatccgttagcaaaagtatctcatttactgctagtcacaaaatt |
6315618 |
T |
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| Q |
310 |
cctttgattattgaagaaatgatatggatttgttactttaaataaacgtttatgtttgcaaggtaaccaaaatttgaaaagcgcaatgaat |
400 |
Q |
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| T |
6315619 |
cctttgattattgaagaaatgatatggatttgttactttaaataaacgtttatgtttgcaaggtaaccaaaatttgaaaagcgcaatgaat |
6315709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 286
Target Start/End: Original strand, 55322830 - 55322887
Alignment:
| Q |
229 |
ggttaattttataaggatgcaagccaatcaagttgctcatccgttagcaaaagtatct |
286 |
Q |
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| T |
55322830 |
ggttaattttataaggagacaagtcaaacaagttgctcattcattagaaaaagtatct |
55322887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 242
Target Start/End: Original strand, 26352137 - 26352201
Alignment:
| Q |
178 |
atccatgatttcaaaatggagaggccgtattaatgtaaaaccaaacttaagggttaattttataa |
242 |
Q |
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| T |
26352137 |
atccatgattttaaaatgtagagactatattaatgtaaaacccagctggagggttaattttataa |
26352201 |
T |
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