View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7159_high_6 (Length: 376)
Name: NF7159_high_6
Description: NF7159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7159_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 18 - 367
Target Start/End: Complemental strand, 38040362 - 38040013
Alignment:
| Q |
18 |
caccacatttttggtcttgagtaattcttttgtagtcatgtcaattttctcaaatccaaaacatgaagtccaagtctgtagtacttgcatcgctgatgga |
117 |
Q |
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| T |
38040362 |
caccacatttttggtcttcagtaattcttttgtagtcatgtcaattttctcaaatccaaaacatgaagtccaagtctgtagtacttgcatcgctgatgga |
38040263 |
T |
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| Q |
118 |
atgaccagcatctccacattcatatagctcagtgcctgcatgcatgtacgtagcaatatattatgtattaaatataatttttaagtagaataaaagtcat |
217 |
Q |
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| T |
38040262 |
atgaccagcatctccacattcatatagctcagtgcctgcatgcatgtacgtagcaatatattatgtattaaatataatttttaagtagaataaaagtcat |
38040163 |
T |
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| Q |
218 |
actaacttatgccctaaatacacaagataaagagctaaaattgaattgaactcaccgactcaatggcattgagaagtctacggcacattccttgtttcct |
317 |
Q |
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| T |
38040162 |
actaacttatgccctaaatacacaagataaagagctaaaattgaattgaactcaccgactcaatggcattgagaagtctacggcacattccttgtttcct |
38040063 |
T |
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| Q |
318 |
aaacctagctcgtgttccaataaatggcatctctgccatttgatgtccat |
367 |
Q |
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| T |
38040062 |
aaacctagcccgtgttccaataaatggcatctctgccatttgatgtccat |
38040013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 353
Target Start/End: Original strand, 31989037 - 31989126
Alignment:
| Q |
264 |
tgaactcaccgactcaatggcattgagaagtctacggcacattccttgtttcctaaacctagctcgtgttccaataaatggcatctctgc |
353 |
Q |
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| T |
31989037 |
tgaacttaccgattcaatggcatttagaagccgacggcacattccttgtcgcctatacatatagcgggtcccaatatatggcatctctgc |
31989126 |
T |
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