View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7159_low_1 (Length: 732)
Name: NF7159_low_1
Description: NF7159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7159_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 704; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 704; E-Value: 0
Query Start/End: Original strand, 18 - 721
Target Start/End: Complemental strand, 29333566 - 29332863
Alignment:
| Q |
18 |
agtaatcgacgagtacgcgaattccaaggacgaatcattattcacaattttcaaatcattcgcacatcattaccctaacgcattcgctttgaaacttgca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29333566 |
agtaatcgacgagtacgcgaattccaaggacgaatcattattcacaattttcaaatcattcgcacatcattaccctaacgcattcgctttgaaacttgca |
29333467 |
T |
|
| Q |
118 |
aagcttctagaatttcaacctccgattcaaacgagaatcgaaaccgttaatcatcttcttcaagttcttcccgaaggaattaacggtcctttcaattcta |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29333466 |
aagcttctagaatttcaacctccgattcaaacgagaatcgaaaccgttaatcatcttcttcaagttcttcccgaaggaattaacggtcctttcaattcta |
29333367 |
T |
|
| Q |
218 |
ttatcttactcgaactgaagaatcctcttcttcattcgcttaaggcggaatctgaagagattctgtttctttcgctatgcgaagcgattggtttacttgc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29333366 |
ttatcttactcgaactgaagaatcctcttcttcattcgcttaaggcggaatctgaagagattctgtttctttcgctatgcgaagcgattggtttacttgc |
29333267 |
T |
|
| Q |
318 |
tgataggttttaccggtgttctcttggtggttgggtggagcttcttgagtatgttctcgcttgtttttccagtgaagtgcaatcggaaaataagaaaggg |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29333266 |
tgataggttttaccggtgttctcttggtggttgggtggagcttcttgagtatgttctcgcttgtttttccagtgaagtgcaatcggaaaataagaaaggg |
29333167 |
T |
|
| Q |
418 |
cttttgttgttaacggtaataccggtggatgttgcgaatgagagagcattttggttgaatcaagggaattttgatcttgtgtttgggagtatcttggaat |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29333166 |
cttttgttgttaacggtaataccggtggatgttgcgaatgagagagcattttggttgaatcaagggaattttgatcttgtgtttgggagtatcttggaat |
29333067 |
T |
|
| Q |
518 |
ggacttatcgggataaggaattgaagggattggcatacaatgcatcaatttcgttgatgttattgtcgcaggagcttaagagaacagatgtatgcgattt |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29333066 |
ggacttatcgggataaggaattgaagggattggcatacaatgcatcaatttcgttgatgttattgtcgcaggagcttaagagaacagatgtatgcgattt |
29332967 |
T |
|
| Q |
618 |
tctgttgccgaatttgttgagtattatcgatgaacatggggaagaagaggttttggtggatagggttaagcgtttgggcgatttagttacgttggatgat |
717 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29332966 |
tctgttgccgaatttgttgagtattatcgatgaacatggggaagaagaggttttggtggatagggttaagcgtttgggcgatttagttacgttggatgat |
29332867 |
T |
|
| Q |
718 |
gatg |
721 |
Q |
| |
|
|||| |
|
|
| T |
29332866 |
gatg |
29332863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 528 - 666
Target Start/End: Complemental strand, 29321862 - 29321724
Alignment:
| Q |
528 |
ggataaggaattgaagggattggcatacaatgcatcaatttcgttgatgttattgtcgcaggagcttaagagaacagatgtatgcgattttctgttgccg |
627 |
Q |
| |
|
|||| |||||||||| | |||||||| || ||||||| |||||||||||||||||||| |||| ||| |||||||||| |||| |||| |||| |||||| |
|
|
| T |
29321862 |
ggatcaggaattgaaagcattggcattcactgcatcactttcgttgatgttattgtcgaaggatcttcagagaacagacgtatacgatattctcttgccg |
29321763 |
T |
|
| Q |
628 |
aatttgttgagtattatcgatgaacatggggaagaagag |
666 |
Q |
| |
|
| |||||||| ||||||| || ||||||| ||||||||| |
|
|
| T |
29321762 |
attttgttgaatattatcaatcaacatggagaagaagag |
29321724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 528 - 718
Target Start/End: Complemental strand, 29304676 - 29304486
Alignment:
| Q |
528 |
ggataaggaattgaagggattggcatacaatgcatcaatttcgttgatgttattgtcgcaggagcttaagagaacagatgtatgcgattttctgttgccg |
627 |
Q |
| |
|
|||| |||||||||||| | |||||||| || |||||||||| ||||| |||||||| | || || || || || |||| | ||| ||| |||| | |
|
|
| T |
29304676 |
ggatcaggaattgaaggcactggcatacgattcatcaatttcattgatattattgtcaaatgattttctgaaaaatgaagtatccaattctctcttgcgg |
29304577 |
T |
|
| Q |
628 |
aatttgttgagtattatcgatgaacatggggaagaagaggttttggtggatagggttaagcgtttgggcgatttagttacgttggatgatg |
718 |
Q |
| |
|
||||| |||| ||| |||||| |||| || |||||||||||| ||||| ||||| |||| |||||| | || ||||||| |||||||||| |
|
|
| T |
29304576 |
aatttattgaatatcatcgatcaacacggagaagaagaggttctggtgaataggattaatcgtttgtgggaattagttaaattggatgatg |
29304486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 251 - 334
Target Start/End: Complemental strand, 29322142 - 29322059
Alignment:
| Q |
251 |
attcgcttaaggcggaatctgaagagattctgtttctttcgctatgcgaagcgattggtttacttgctgataggttttaccggt |
334 |
Q |
| |
|
||||||| |||| ||||||||||| |||||||||| ||||||||||||| ||| |||||| | ||||| ||||| ||||||| |
|
|
| T |
29322142 |
attcgctcaaggtagaatctgaagaaattctgtttccttcgctatgcgaaatgatgggtttattcgctgacaggttgtaccggt |
29322059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 65 - 129
Target Start/End: Complemental strand, 29296069 - 29296005
Alignment:
| Q |
65 |
ttttcaaatcattcgcacatcattaccctaacgcattcgctttgaaacttgcaaagcttctagaa |
129 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||||||||| || || || || ||||||||| |
|
|
| T |
29296069 |
ttttcaaatccctcgctcatcattaccctaacgcattcgctttcaagctcgcgaaacttctagaa |
29296005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University