View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7159_low_2 (Length: 458)
Name: NF7159_low_2
Description: NF7159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7159_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 52740972 - 52740601
Alignment:
| Q |
1 |
ggttgagaaagaatcacagaaacaagtgactttctcaaaaagaagacaaggtttattcagaaaagcaagcgaactttgtgtcttatgtgatgttcatgca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52740972 |
ggttgagaaagaatcacagaaacaagtgactttctcaaaaagaagacaaggtttattcagaaaagcaagcgaactttgtgtcttatgtgatgttcatgca |
52740873 |
T |
|
| Q |
101 |
gccatcattgtgttttctcctggtgacaaactattttgttttggccaacccgacacatactctgtcctcaacagctacatcaaaggaaccactgagtttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52740872 |
gccatcattgtgttttctcctggtgacaaactattttgttttggccaacccgacacatactctgtcctcaacagctacatcaaaggaaccactgagtttg |
52740773 |
T |
|
| Q |
201 |
aggattcaaaggtagcagaaaattttctgacctaccaagattacaatagacaatatgtggaggcacaaaagatgttggagatggaaaagaagaaactaga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52740772 |
aggattcaaaggtagcagaaaattttctgacctaccaagattacaatagacaatatgtggaggcacaaaagatgttggagatggaaaagaagaaactaga |
52740673 |
T |
|
| Q |
301 |
agatgttcaaaatttggctaagattttcaacaagggtggtgattggtggaatgattcaattgatgatatgag |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52740672 |
agatgttcaaaatttggctaagattttcaacaagggtggtgattggtggaatgattcaattgatgatatgag |
52740601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 345 - 443
Target Start/End: Complemental strand, 52740601 - 52740503
Alignment:
| Q |
345 |
ggtggaatgattcaattgatgatatgagtagtgatcaacttgaacaatttatgatatccatttatgagttaaggaggaagcttgttgaaagggctgatg |
443 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52740601 |
ggtggaatgattcaattgatgatatgagtagtgatcaacttgaacaatttatgatatccatttatgagttaaggaggaagcttgttgaaagggctgatg |
52740503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 22 - 207
Target Start/End: Complemental strand, 13539554 - 13539369
Alignment:
| Q |
22 |
acaagtgactttctcaaaaagaagacaaggtttattcagaaaagcaagcgaactttgtgtcttatgtgatgttcatgcagccatcattgtgttttctcct |
121 |
Q |
| |
|
|||||| || |||||||| ||||||||||| |||||| ||||||||| |||||||||||||||||||| | |||| |||||| | |||||||| || |
|
|
| T |
13539554 |
acaagtcacattctcaaagcgaagacaaggtctattcaaaaaagcaagtgaactttgtgtcttatgtgacgcacatgtagccatggtggtgttttccccg |
13539455 |
T |
|
| Q |
122 |
ggtgacaaactattttgttttggccaacccgacacatactctgtcctcaacagctacatcaaaggaaccactgagtttgaggattc |
207 |
Q |
| |
|
|||||||||||||| ||||| |||||| ||| || | | || || ||||||||||| | ||||||||||||||||||||| |
|
|
| T |
13539454 |
tccgacaaactattttgctttggtcaacccaacatcgacacaattcttaatagctacatcaacgaaaccactgagtttgaggattc |
13539369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 341 - 416
Target Start/End: Complemental strand, 13539262 - 13539187
Alignment:
| Q |
341 |
gattggtggaatgattcaattgatgatatgagtagtgatcaacttgaacaatttatgatatccatttatgagttaa |
416 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||| | ||||||||||||||| ||||||| | ||||||| |
|
|
| T |
13539262 |
gattggtggaatgattccattgatgatatgagtattgaagagcttgaacaatttatggaatccattaaagagttaa |
13539187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 237 - 316
Target Start/End: Complemental strand, 13539351 - 13539272
Alignment:
| Q |
237 |
aagattacaatagacaatatgtggaggcacaaaagatgttggagatggaaaagaagaaactagaagatgttcaaaatttg |
316 |
Q |
| |
|
|||| |||||||||| ||||| ||||||| ||| ||||||||| ||| ||||||||||||| ||||||||||||||| |
|
|
| T |
13539351 |
aagagtacaatagacgatatgaggaggcattaaaaatgttggagtcggagaagaagaaactagccgatgttcaaaatttg |
13539272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 29 - 443
Target Start/End: Complemental strand, 45394333 - 45393922
Alignment:
| Q |
29 |
actttctcaaaaagaagacaaggtttattcagaaaagcaagcgaactttgtgtcttatgtgatgttcatgcagccatcattgtgttttctcctggtgaca |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
45394333 |
actttctcaaaaagaagacaaggtttattcagaaaagcaagcgaactttgtgtcttatgtgatgttcatgcagccatcattgtgttttcccctggtgaca |
45394234 |
T |
|
| Q |
129 |
aactattttgttttggccaacccgacacatactctgtcctcaacagctacatcaaaggaaccactgagtttgaggattcaaaggtagcagaaaattttct |
228 |
Q |
| |
|
|||| | |||||||| ||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| || |
|
|
| T |
45394233 |
aactctactgttttgggcaacccgacactaacgttgtcctcaatagctacatcaaaggaaccactgagtttgaggattcaaagtcagcagaaaattctcc |
45394134 |
T |
|
| Q |
229 |
gacctaccaagattacaatagacaatatgtggaggcacaaaagatgttggagatggaaaagaagaaactagaagatgttcaaaatttggctaagattttc |
328 |
Q |
| |
|
||| | | ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45394133 |
gacttgcaaagattacaatagacaatatgaggaggcacaaaagatgttggagacggaaaagaagaaactagaagatgttcaaaatttggctaagattttc |
45394034 |
T |
|
| Q |
329 |
aacaagggtggtgattggtggaatgattcaattgatgatatgagtagtgatcaacttgaacaatttatgatatccatttatgagttaaggaggaagcttg |
428 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||| ||||||||||||||||||| |
|
|
| T |
45394033 |
aacaag---ggtgactggtggaatgattcaattgatgatatgagtagtgatcagcttgaacaatttatggtgtccatttacgagttaaggaggaagcttg |
45393937 |
T |
|
| Q |
429 |
ttgaaagggctgatg |
443 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
45393936 |
ttgaaagggctgatg |
45393922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 111; Significance: 7e-56; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 23 - 443
Target Start/End: Original strand, 35782011 - 35782428
Alignment:
| Q |
23 |
caagtgactttctcaaaaagaagacaaggtttattcagaaaagcaagcgaactttgtgtcttatgtgatgttcatgcagccatcattgtgttttctcctg |
122 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| ||||||| || |||||||| |||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
35782011 |
caagtcactttctcaaaaagaagacaaggtttattccgaaaagcgagtgaactttgcactttatgtgatgttcatgcagccatcatcgtgttttctcctg |
35782110 |
T |
|
| Q |
123 |
gtgacaaactattttgttttggccaacccgacacatactctgtcctcaacagctacatcaaaggaaccactgagtttgaggattcaaaggtagcagaaaa |
222 |
Q |
| |
|
|| ||||||| ||||| || |||| |||| || |||| || ||||||||||| ||||||| ||||||||| | |||||| | | | ||| |
|
|
| T |
35782111 |
ctggcaaactacactgtttcggtgaaccaaacaccgaccaaatccttaatagctacatcaatggaaccattgagtttgatgtttcaaactcaacgggaaa |
35782210 |
T |
|
| Q |
223 |
ttttctgacctaccaagattacaatagacaatatgtggaggcacaaaagatgttggagatggaaaagaagaaactagaagatgttcaaaatttggctaag |
322 |
Q |
| |
|
|| | ||||||| |||| ||||||| |||||||| |||||||| |||| ||||||| |||||||| ||||||| | |||||| |||||||| ||||| |
|
|
| T |
35782211 |
ttcttcgacctacaaagagtacaataaacaatatgaggaggcactaaaggtgttggaaatggaaaaacagaaacttgctgatgttgaaaatttgactaag |
35782310 |
T |
|
| Q |
323 |
attttcaacaagggtggtgattggtggaatgattcaattgatgatatgagtagtgatcaacttgaacaatttatgatatccatttatgagttaaggagga |
422 |
Q |
| |
|
|||| || | | ||| | ||||||||||| || |||||||| |||| ||||||||| |||||| |||||||| ||||||| |||||||| ||||| |
|
|
| T |
35782311 |
atttggaatatg---ggtaactggtggaatgaatctattgatgagatgaatagtgatcagcttgaagaatttatggagtccatttctgagttaaagagga |
35782407 |
T |
|
| Q |
423 |
agcttgttgaaagggctgatg |
443 |
Q |
| |
|
|||| |||||| |||||||| |
|
|
| T |
35782408 |
agctacttgaaaaggctgatg |
35782428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 8e-22; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 22 - 207
Target Start/End: Complemental strand, 9668530 - 9668345
Alignment:
| Q |
22 |
acaagtgactttctcaaaaagaagacaaggtttattcagaaaagcaagcgaactttgtgtcttatgtgatgttcatgcagccatcattgtgttttctcct |
121 |
Q |
| |
|
|||||| || |||||||| ||||||||||| |||||| ||||||||| |||||||||||||||||||| | |||| |||||| | |||||||| || |
|
|
| T |
9668530 |
acaagtcacattctcaaagcgaagacaaggtctattcaaaaaagcaagtgaactttgtgtcttatgtgacgcacatgtagccatggtggtgttttccccg |
9668431 |
T |
|
| Q |
122 |
ggtgacaaactattttgttttggccaacccgacacatactctgtcctcaacagctacatcaaaggaaccactgagtttgaggattc |
207 |
Q |
| |
|
|||||||||||||| ||||| |||||| ||| || | | || || ||||||||||| | ||||||||||||||||||||| |
|
|
| T |
9668430 |
tccgacaaactattttgctttggtcaacccaacatcgacacaattcttaatagctacatcaacgaaaccactgagtttgaggattc |
9668345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 341 - 416
Target Start/End: Complemental strand, 9668238 - 9668163
Alignment:
| Q |
341 |
gattggtggaatgattcaattgatgatatgagtagtgatcaacttgaacaatttatgatatccatttatgagttaa |
416 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||| | ||||||||||||||| ||||||| | ||||||| |
|
|
| T |
9668238 |
gattggtggaatgattccattgatgatatgagtattgaagagcttgaacaatttatggaatccattaaagagttaa |
9668163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 237 - 316
Target Start/End: Complemental strand, 9668327 - 9668248
Alignment:
| Q |
237 |
aagattacaatagacaatatgtggaggcacaaaagatgttggagatggaaaagaagaaactagaagatgttcaaaatttg |
316 |
Q |
| |
|
|||| |||||||||| ||||| ||||||| ||| ||||||||| ||| ||||||||||||| ||||||||||||||| |
|
|
| T |
9668327 |
aagagtacaatagacgatatgaggaggcattaaaaatgttggagtcggagaagaagaaactagccgatgttcaaaatttg |
9668248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 242 - 407
Target Start/End: Original strand, 47836263 - 47836428
Alignment:
| Q |
242 |
tacaatagacaatatgtggaggcacaaaagatgttggagatggaaaagaagaaactagaagatgttcaaaatttggct---aagattttcaacaagggtg |
338 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||| ||| | || |||||||||||| ||||| | ||| |||||| ||| |||| || || |||| |
|
|
| T |
47836263 |
tacaatagacaatatgaggaggcattaaagatgttagagttagagaagaagaaactaacagatgctgaaattttggcggccaagtttttgaagaaaggtg |
47836362 |
T |
|
| Q |
339 |
gtgattggtggaatgattcaattgatgatatgagtagtgatcaacttgaacaatttatgatatccattt |
407 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| ||||||||||||||| | ||||||| |
|
|
| T |
47836363 |
---attggtggaatgattcaattgacaatatgagtagtgaagtgcttgaacaatttatggtgtccattt |
47836428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University