View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7159_low_3 (Length: 431)
Name: NF7159_low_3
Description: NF7159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7159_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 19 - 420
Target Start/End: Original strand, 50958333 - 50958745
Alignment:
| Q |
19 |
ggttggcctgggctcatgataaaattttatacgtaattgttctggaacatagttgaaggtagtaatgattcttaa-------------tgctttactgtg |
105 |
Q |
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| T |
50958333 |
ggttggcctgggctcatgataaaattttatacggaattgttctggaacatagttgaaggtagtaatgatttttaataatgatttttaatgctttactgtg |
50958432 |
T |
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| Q |
106 |
tagaagaatgcaattatgcataaattttgtgtgaatttattgagatggaacataatttatgttagcattatgtgcttaaggcataggcatgcctaattag |
205 |
Q |
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| T |
50958433 |
tagaagaatgcaattatgcataaattttgtgtgaatttattgagatggaacataatttatgttagcattatgtgcttaaggcataggcatgcctaattag |
50958532 |
T |
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| Q |
206 |
tgtagctacaacagtactaaagatcaaggccaggaaaagaaaagatacagtgattaagatatgataatacaattgagctagcacaacacaagatgacttt |
305 |
Q |
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| T |
50958533 |
tgtagctacaacactactaaagatcaaggccaggaaaagaaaagatacagtgattaagatatgataatacaattgagctagcacaacacaagatgacttt |
50958632 |
T |
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| Q |
306 |
atggtgcaattgaggttggcttgagtcttgttaaagttttgtatacgcataacacaagatgcatcctcccttgcttttatatgacagtgatacgttaatt |
405 |
Q |
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| T |
50958633 |
atggtgcaattgaggttggcttgagtcttgttaaagttttgtatacgcataacacaagatgcatcctcccttgcttt--tatgacagtgatacgttaatt |
50958730 |
T |
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| Q |
406 |
gtttttaacacaggt |
420 |
Q |
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| T |
50958731 |
gtttttaacacaggt |
50958745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 53 - 165
Target Start/End: Original strand, 50949637 - 50949747
Alignment:
| Q |
53 |
aattgttctggaacatagttgaaggtagtaatgattcttaatgctttactgtgtagaagaatgcaattatgcataaattttgtgtgaatttattgagatg |
152 |
Q |
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| T |
50949637 |
aattgttcttgaacaaagttgaaggtaattatgattttcaatgctttactat--agaaggatgcagttacacataagttttgtatgaattcattgagatg |
50949734 |
T |
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| Q |
153 |
gaacataatttat |
165 |
Q |
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|||||| |||||| |
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| T |
50949735 |
gaacattatttat |
50949747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 212 - 287
Target Start/End: Original strand, 50980102 - 50980177
Alignment:
| Q |
212 |
tacaacagtactaaagatcaaggccaggaaaagaaaagatacagtgattaagatatgataatacaattgagctagc |
287 |
Q |
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| T |
50980102 |
tacaacactactaaaaatcaaggccaggaaaagagaaattacaatgattatgatatgacaatgcaattgatctagc |
50980177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 93 - 175
Target Start/End: Original strand, 50979991 - 50980073
Alignment:
| Q |
93 |
atgctttactgtgtagaagaatgcaattatgcataaattttgtgtgaatttattgagatggaacataatttatgttagcatta |
175 |
Q |
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| T |
50979991 |
atgctttagtgtatagaggaatgcaattatgcagaaattttgtattaattcattgagatagaacgttatttatgctcgcatta |
50980073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 15856772 - 15856821
Alignment:
| Q |
109 |
aagaatgcaattatgcataaattttgtgtgaatttattgagatggaacat |
158 |
Q |
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| T |
15856772 |
aagaatgcaatcatgcagaaattttgtatgagttcattgagatggaacat |
15856821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 78 - 185
Target Start/End: Original strand, 33632271 - 33632378
Alignment:
| Q |
78 |
tagtaatgattcttaatgctttactgtgtagaagaatgcaattatgcataaattttgtgtgaatttattgagatggaacataatttatgttagcattatg |
177 |
Q |
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|||| |||||| | |||||||||| || ||||||||||||||| |||| ||||||||| |||||| |||||||| ||| || | |||||| |||||||| |
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| T |
33632271 |
tagttatgattttcaatgctttacagtatagaagaatgcaattttgcagaaattttgtatgaattcattgagattgaatattacgtatgttggcattatg |
33632370 |
T |
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| Q |
178 |
tgcttaag |
185 |
Q |
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| T |
33632371 |
tgcttaag |
33632378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 349 - 398
Target Start/End: Original strand, 33632496 - 33632545
Alignment:
| Q |
349 |
tacgcataacacaagatgcatcctcccttgcttttatatgacagtgatac |
398 |
Q |
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| T |
33632496 |
tacgcataacacaagatgcttcctcctttgcatttacatgacagtgatac |
33632545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 106 - 185
Target Start/End: Original strand, 8156636 - 8156716
Alignment:
| Q |
106 |
tagaagaatgca-attatgcataaattttgtgtgaatttattgagatggaacataatttatgttagcattatgtgcttaag |
185 |
Q |
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| T |
8156636 |
tagaagattgcatattatgcagacattttgtatgaattcattgagatggaacattatttatgttggcattatgtgcttaag |
8156716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 230 - 282
Target Start/End: Original strand, 8156760 - 8156812
Alignment:
| Q |
230 |
caaggccaggaaaagaaaagatacagtgattaagatatgataatacaattgag |
282 |
Q |
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| T |
8156760 |
caaggccgggaaaagagaagatacaatgattaagatatgataatgcaattgag |
8156812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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