View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7160_high_4 (Length: 242)
Name: NF7160_high_4
Description: NF7160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7160_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 156 - 234
Target Start/End: Complemental strand, 4048477 - 4048399
Alignment:
| Q |
156 |
ttacctgaaatcagacgcaagccaattagaagaaagaaaatattattactttctttgttttcttcactagttatctttg |
234 |
Q |
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| T |
4048477 |
ttacctgaaatcagacgcaagccaattagaagaaagaaaatattattactttctttgttttcttcactagttatctttg |
4048399 |
T |
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Target: chr6; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 72 - 153
Target Start/End: Complemental strand, 4048731 - 4048649
Alignment:
| Q |
72 |
taataataatatataggagaaggggaaattatgtccaatcttagtttg-ttttaatcaaatgatgaatgagaacaacaaacat |
153 |
Q |
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| T |
4048731 |
taataataatatgcaggagaaggggaaattatgtccaatcttagtttgtttttaatcaaatgatgaatgagaacaacaaacat |
4048649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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