View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7160_low_1 (Length: 634)

Name: NF7160_low_1
Description: NF7160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7160_low_1
NF7160_low_1
[»] chr2 (14 HSPs)
chr2 (105-629)||(5083494-5084018)
chr2 (140-629)||(5111053-5111542)
chr2 (98-629)||(5094050-5094574)
chr2 (16-80)||(23081006-23081069)
chr2 (16-88)||(20100761-20100832)
chr2 (16-80)||(2077054-2077117)
chr2 (16-80)||(5863196-5863259)
chr2 (16-80)||(7511559-7511622)
chr2 (16-80)||(7515843-7515906)
chr2 (16-80)||(18386566-18386629)
chr2 (16-80)||(20962256-20962319)
chr2 (16-80)||(33010808-33010871)
chr2 (16-80)||(34963565-34963628)
chr2 (16-80)||(36202130-36202193)
[»] chr6 (10 HSPs)
chr6 (421-629)||(14427589-14427800)
chr6 (16-80)||(10738767-10738830)
chr6 (16-80)||(2965784-2965847)
chr6 (16-80)||(4407878-4407941)
chr6 (16-80)||(6176904-6176967)
chr6 (16-80)||(16127123-16127185)
chr6 (16-80)||(19591512-19591575)
chr6 (16-80)||(25948840-25948903)
chr6 (16-80)||(28039106-28039169)
chr6 (16-80)||(32276298-32276361)
[»] chr3 (14 HSPs)
chr3 (420-580)||(16873359-16873519)
chr3 (16-88)||(18546376-18546447)
chr3 (572-623)||(16872502-16872553)
chr3 (285-364)||(16873503-16873578)
chr3 (16-70)||(46827986-46828040)
chr3 (119-211)||(16873580-16873671)
chr3 (16-80)||(54014567-54014630)
chr3 (16-70)||(24721139-24721193)
chr3 (17-67)||(29169813-29169863)
chr3 (16-70)||(54014768-54014822)
chr3 (16-80)||(5047379-5047442)
chr3 (16-80)||(25484126-25484189)
chr3 (16-80)||(40717571-40717634)
chr3 (16-80)||(51831474-51831537)
[»] chr7 (11 HSPs)
chr7 (16-80)||(24919881-24919944)
chr7 (16-80)||(46483834-46483897)
chr7 (19-78)||(18024626-18024684)
chr7 (16-66)||(3158409-3158459)
chr7 (16-69)||(24932165-24932218)
chr7 (16-80)||(813630-813693)
chr7 (16-80)||(3223052-3223115)
chr7 (16-80)||(3333002-3333065)
chr7 (16-80)||(12180142-12180205)
chr7 (16-80)||(30165484-30165547)
chr7 (16-80)||(37101523-37101586)
[»] chr8 (15 HSPs)
chr8 (9-80)||(27418117-27418187)
chr8 (16-80)||(10761140-10761203)
chr8 (16-80)||(22981021-22981084)
chr8 (9-80)||(12317541-12317611)
chr8 (16-78)||(13201879-13201940)
chr8 (16-69)||(37597722-37597775)
chr8 (17-69)||(12318697-12318749)
chr8 (16-80)||(17713460-17713523)
chr8 (16-80)||(18609280-18609343)
chr8 (16-80)||(23352010-23352073)
chr8 (16-80)||(23382885-23382948)
chr8 (16-80)||(27417182-27417245)
chr8 (16-80)||(28004650-28004713)
chr8 (16-80)||(28061952-28062015)
chr8 (16-80)||(29579921-29579984)
[»] chr4 (9 HSPs)
chr4 (16-69)||(22324460-22324513)
chr4 (16-80)||(18638345-18638408)
chr4 (16-80)||(19675821-19675884)
chr4 (16-80)||(26717302-26717365)
chr4 (19-80)||(39489165-39489225)
chr4 (16-80)||(32607-32670)
chr4 (16-80)||(6458135-6458198)
chr4 (16-64)||(18909583-18909631)
chr4 (16-80)||(23573172-23573235)
[»] scaffold0284 (1 HSPs)
scaffold0284 (16-80)||(3373-3436)
[»] chr5 (14 HSPs)
chr5 (16-80)||(7579045-7579108)
chr5 (16-80)||(29690677-29690740)
chr5 (17-80)||(1950017-1950079)
chr5 (16-80)||(1948770-1948833)
chr5 (16-80)||(10542051-10542114)
chr5 (16-80)||(16867770-16867833)
chr5 (16-80)||(20352643-20352706)
chr5 (16-80)||(20884043-20884106)
chr5 (17-69)||(26719340-26719392)
chr5 (17-69)||(26989084-26989136)
chr5 (16-80)||(29690474-29690537)
chr5 (16-80)||(38031966-38032029)
chr5 (16-80)||(39886523-39886586)
chr5 (16-80)||(42418671-42418734)
[»] chr1 (13 HSPs)
chr1 (16-80)||(3787249-3787312)
chr1 (16-80)||(39934941-39935004)
chr1 (16-69)||(13430461-13430514)
chr1 (16-69)||(15231656-15231709)
chr1 (16-69)||(16087360-16087413)
chr1 (16-88)||(5246483-5246554)
chr1 (16-80)||(15734484-15734547)
chr1 (16-80)||(29525834-29525897)
chr1 (16-80)||(33465821-33465884)
chr1 (16-80)||(37216452-37216515)
chr1 (16-80)||(38601180-38601243)
chr1 (16-80)||(38601382-38601445)
chr1 (16-80)||(43064274-43064337)
[»] scaffold0809 (1 HSPs)
scaffold0809 (16-68)||(2016-2068)
[»] scaffold0199 (1 HSPs)
scaffold0199 (16-80)||(12053-12116)
[»] scaffold0098 (1 HSPs)
scaffold0098 (16-80)||(4172-4235)
[»] scaffold0035 (1 HSPs)
scaffold0035 (16-80)||(72190-72253)
[»] scaffold0009 (1 HSPs)
scaffold0009 (16-80)||(24773-24836)
[»] scaffold0001 (1 HSPs)
scaffold0001 (16-80)||(403680-403743)


Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 105 - 629
Target Start/End: Original strand, 5083494 - 5084018
Alignment:
Q  105 catgcatgttattatgtaatgttgtgagtatagcatacccgatgaagagttatttgctagatgaatttcttcaagtgatgacatgttagaaattgttgtt 204  Q
    |||||||||||| |||||||  ||||| |||| |||||| ||| ||||||| ||||||| |||||||||||||||||| |||||||| || |||||||||    
T  5083494 catgcatgttatgatgtaatagtgtgaatatatcataccagataaagagttgtttgctaaatgaatttcttcaagtgaagacatgttggatattgttgtt 5083593  T
Q  205 ggtatgattccagagagcttgttatttctaatatccaaaatcctcaacataggaagttgaccaatagcatgtggaatggttcctttgatgaaatttgatt 304  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||| ||||||||||||||||||||||||  ||||||||    
T  5083594 ggtaggattccagagagcttgttatttctaatatccaaaatcctcaacataccaagttgactaatggcatgtggaatggttcctttgatgtgatttgatt 5083693  T
Q  305 tccaatctagatactctaacattgacaagttggatatagattgaggaatagctccaacaatattattatggccaagatccaagtgttgaagttttgataa 404  Q
    || ||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| || || | || |||||| |||||||||||||||||    
T  5083694 tcaaatttagatattctaacattgacaagttggatatagattgaggaataactccaacaatattgttttgccgaatatccaattgttgaagttttgataa 5083793  T
Q  405 ctctcctatccttgaaggaatttctccaacaaaatcattgttactcaaatccaaccatttcaatctcttcaactgaagtaactcatgtggtaactcacca 504  Q
     || |||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  5083794 gtcccctatccttgaaggaatttctccaacaaaatcattgttgctcaaattcaacaatttcaatctcttcaactgaagtaactcatgtggtaactcacca 5083893  T
Q  505 tggaaactattgcgatgtagatcaagaacagcaaggaaagaaagatttcccaattgaggagaaattgtaccttcaaggtacatattactaagattcaatg 604  Q
    ||||||||||| |  |||||||||||||   |||||||||| ||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||    
T  5083894 tggaaactatttccttgtagatcaagaaatacaaggaaagagagatttcccaattgaggggaaattgtaccttcaaggtccatgttactaagattcaatg 5083993  T
Q  605 catttactcttccatgatgtccatc 629  Q
    |||||||||||||||||||| ||||    
T  5083994 catttactcttccatgatgttcatc 5084018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 140 - 629
Target Start/End: Complemental strand, 5111542 - 5111053
Alignment:
Q  140 tacccgatgaagagttatttgctagatgaatttcttcaagtgatgacatgttagaaattgttgttggtatgattccagagagcttgttatttctaatatc 239  Q
    |||||||| | ||||||||||||| |||||||||||||||||| |||||||| || ||||||||||||| ||||||| ||||||||||||||||||||||    
T  5111542 tacccgataaggagttatttgctaaatgaatttcttcaagtgaagacatgttggatattgttgttggtaggattccacagagcttgttatttctaatatc 5111443  T
Q  240 caaaatcctcaacataggaagttgaccaatagcatgtggaatggttcctttgatgaaatttgatttccaatctagatactctaacattgacaagttggat 339  Q
    ||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||   || ||||||| |||  |||||||||||||| ||||    
T  5111442 caaaatcctcaacataccaagttgaccaatggcatgtggaatggttcctttgatgaaatttgtactcaaatctaggtaccgtaacattgacaagtcggat 5111343  T
Q  340 atagattgaggaatagctccaacaatattattatggccaagatccaagtgttgaagttttgataactctcctatccttgaaggaatttctccaacaaaat 439  Q
    ||||||||||||||||||||||||| |||||||  |  ||||||||| || |||||||||| ||| || |||||||||||||||||||||||||||||||    
T  5111342 atagattgaggaatagctccaacaaaattattaaagtaaagatccaaatgatgaagttttgctaagtcccctatccttgaaggaatttctccaacaaaat 5111243  T
Q  440 cattgttactcaaatccaaccatttcaatctcttcaactgaagtaactcatgtggtaactcaccatggaaactattgcgatgtagatcaagaacagcaag 539  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  |||| |||||||||| ||||    
T  5111242 cattgtcactcaaatccaaccatttcaatctcttcaactgaagtaactcatgtggtaactcaccatagaaactattgccttgtaaatcaagaacaacaag 5111143  T
Q  540 gaaagaaagatttcccaattgaggagaaattgtaccttcaaggtacatattactaagattcaatgcatttactcttccatgatgtccatc 629  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||| ||||||||| ||||||||||||||| ||||    
T  5111142 gaaagaaagatttcccaattgaggagaaattgtaccttcaaggtccatgttattaagatccaatgcattcactcttccatgatgttcatc 5111053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 98 - 629
Target Start/End: Complemental strand, 5094574 - 5094050
Alignment:
Q  98 actcaatcatgcatgttattatgtaatgttgtgagtatagcatacccgatgaagagttatttgctagatgaatttcttcaagtgatgacatgttagaaat 197  Q
    ||||||||||||||||||| |||||||| |||||||||| |||||| ||| | ||||||||||||| || |||| |||||||||| ||||||||  ||||    
T  5094574 actcaatcatgcatgttatcatgtaatggtgtgagtatatcatacctgataaggagttatttgctaaataaattacttcaagtgaagacatgttgcaaat 5094475  T
Q  198 tgttgttggtatgattccagagagct---tgttatttctaatatccaaaatcctcaacataggaagttgaccaatagcatgtggaatggttcctttgatg 294  Q
    |||||||||||| |||||||| |||    ||||||| | ||||  ||||  |||||||  | ||||||||||||| ||||||||||||||||||||||||    
T  5094474 tgttgttggtatcattccagacagcaacctgttattaccaatactcaaatacctcaactgacgaagttgaccaattgcatgtggaatggttcctttgatg 5094375  T
Q  295 aaatttgatttccaatctagatactctaacattgacaagttggatatagattgaggaatagctccaacaatattattatggccaagatccaagtgttgaa 394  Q
              || ||  |||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||| || || |||||| |||||||    
T  5094374 ----------tcaaacgtagatattctaacattgacaagttgaatatagattgaggaataactccaacaatattattatagctaatatccaattgttgaa 5094285  T
Q  395 gttttgataactctcctatccttgaaggaatttctccaacaaaatcattgttactcaaatccaaccatttcaatctcttcaactgaagtaactcatgtgg 494  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||| |||| |||||||||| ||||||||||| |||||||||||    
T  5094284 gttttgataactcccctatccttgaaggaatttctccaacaaaatcattgttgcttaaattcaacaatttcaatcttttcaactgaagcaactcatgtgg 5094185  T
Q  495 taactcaccatggaaactattgcgatgtagatcaagaacagcaaggaaagaaagatttcccaattgaggagaaattgtaccttcaaggtacatattacta 594  Q
    |||||||||||||||||||||||  |||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||  |||  |||||    
T  5094184 taactcaccatggaaactattgccctgtaaatcaagaacaataaggaaagaaagatttcccaattgaggagaaattgtaccttcaaggcccatgctacta 5094085  T
Q  595 agattcaatgcatttactcttccatgatgtccatc 629  Q
    |||||||||||||||||||||||||| ||| ||||    
T  5094084 agattcaatgcatttactcttccatggtgttcatc 5094050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 23081006 - 23081069
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||||||||||||||||| ||| ||||||||| |||||||  |||||||||||| ||||||||||    
T  23081006 atcaaaccgaaaattttatagggacgaaaatcgaaaatgacatatattacaggg-gtgaaaaaca 23081069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 20100832 - 20100761
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaacaatagtaac 88  Q
    |||||||||||||||||| ||| ||||||| | |||||||  |||||||||||| ||||||| ||||| ||||    
T  20100832 atcaaaccgaaaattttatagggacgaaaaccgaaaatgacatatattacaggg-gtgaaaagcaatattaac 20100761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 2077117 - 2077054
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||||||||||||||||| |||  |||||||  |||||||  |||||||||||| ||||||||||    
T  2077117 atcaaaccgaaaattttataggggcgaaaataaaaaatgacatatattacaggg-gtgaaaaaca 2077054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 5863259 - 5863196
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||||||||||||||||| |||  ||||||||  ||||||  |||||||||||| ||||||||||    
T  5863259 atcaaaccgaaaattttaaaggggcgaaaatcggaaatgacatatattacaggg-gtgaaaaaca 5863196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 7511559 - 7511622
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||||||||||||||||| |||  |||||| |  ||||||| |||||||||||| ||||||||||    
T  7511559 atcaaaccgaaaattttataggggcgaaaaccggaaatgaaatatattacaggg-gtgaaaaaca 7511622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 7515843 - 7515906
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||||||||||||||||| |||  |||||| |  ||||||| |||||||||||| ||||||||||    
T  7515843 atcaaaccgaaaattttataggggcgaaaaccggaaatgaaatatattacaggg-gtgaaaaaca 7515906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 18386566 - 18386629
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||||||||||||||||| |||| |||||| | |||||   ||||||||||||| ||||||||||    
T  18386566 atcaaaccgaaaattttataggagcgaaaaccaaaaatagcttatattacaggg-gtgaaaaaca 18386629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 20962256 - 20962319
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||||||||||||||||| |||  |||||| | |||||||  |||||||||||| ||||||||||    
T  20962256 atcaaaccgaaaattttataggggcgaaaaccgaaaatgacatatattacaggg-gtgaaaaaca 20962319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 33010871 - 33010808
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||||||| ||||||||| ||| |||||||||  ||||||  |||||||||||| ||||||||||    
T  33010871 atcaaaccaaaaattttagagggacgaaaatcagaaatgacatatattacaggg-gtgaaaaaca 33010808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 34963565 - 34963628
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||||||||||||||||| |||  |||||| | |||||||  |||||||||||| ||||||||||    
T  34963565 atcaaaccgaaaattttataggggcgaaaaccgaaaatgacatatattacaggg-gtgaaaaaca 34963628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 36202193 - 36202130
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||||||||||||||||| |||  |||||| | |||||||  |||||||||||| ||||||||||    
T  36202193 atcaaaccgaaaattttataggggcgaaaaccgaaaatgacatatattacaggg-gtgaaaaaca 36202130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 134; Significance: 2e-69; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 421 - 629
Target Start/End: Original strand, 14427589 - 14427800
Alignment:
Q  421 ggaatttctccaacaaaatcattgttactcaaatccaaccatttcaatctctt---caactgaagtaactcatgtggtaactcaccatggaaactattgc 517  Q
    |||||||||||||||||||||||||| ||||||||||||  ||||||||| ||   ||| |||| |||||||||||||||||||||||||||||||||||    
T  14427589 ggaatttctccaacaaaatcattgttgctcaaatccaacattttcaatctattatgcaattgaaataactcatgtggtaactcaccatggaaactattgc 14427688  T
Q  518 gatgtagatcaagaacagcaaggaaagaaagatttcccaattgaggagaaattgtaccttcaaggtacatattactaagattcaatgcatttactcttcc 617  Q
     |||||||||||||||| |||||||||| |||||||| ||||||||||||||  |||||||||||  ||| |||||||||||||||||||||||||||||    
T  14427689 catgtagatcaagaacaacaaggaaagagagatttcctaattgaggagaaatgttaccttcaaggcccatgttactaagattcaatgcatttactcttcc 14427788  T
Q  618 atgatgtccatc 629  Q
    ||||||| ||||    
T  14427789 atgatgttcatc 14427800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 10738830 - 10738767
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||||||||||||||||| ||| ||||||| | |||||||  |||||||||||| ||||||||||    
T  10738830 atcaaaccgaaaattttatagggacgaaaaccgaaaatgacatatattacaggg-gtgaaaaaca 10738767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 2965784 - 2965847
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||||||||||||||||| |||  |||||| | |||||||  |||||||||||| ||||||||||    
T  2965784 atcaaaccgaaaattttataggggcgaaaaccgaaaatgacatatattacaggg-gtgaaaaaca 2965847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 4407941 - 4407878
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||||||||||||||||| |||  ||||||||  ||||||  |||||||||||| ||||||||||    
T  4407941 atcaaaccgaaaattttataggggcgaaaatcggaaatgacatatattacaggg-gtgaaaaaca 4407878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 6176904 - 6176967
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||||||||||||||||| ||  ||||||| | |||||||  |||||||||||| ||||||||||    
T  6176904 atcaaaccgaaaattttatagagacgaaaaccgaaaatgacatatattacaggg-gtgaaaaaca 6176967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 16127185 - 16127123
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||||||||||||||||| ||||||||||| |  ||||||  |||||||||||| ||||||||||    
T  16127185 atcaaaccgaaaattttataggaacgaaaa-ccgaaatgacatatattacaggg-gtgaaaaaca 16127123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 19591512 - 19591575
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||||||||||||||||| |||  |||||| | |||||||  |||||||||||| ||||||||||    
T  19591512 atcaaaccgaaaattttataggggcgaaaaccgaaaatgacatatattacaggg-gtgaaaaaca 19591575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 25948840 - 25948903
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||||||||||||||||| |||  |||||| | |||||||  |||||||||||| ||||||||||    
T  25948840 atcaaaccgaaaattttataggggcgaaaaccgaaaatgacatatattacaggg-gtgaaaaaca 25948903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 28039106 - 28039169
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||||||||||||||||| |||| |||||| |  ||||||  |||||||||||| ||||||||||    
T  28039106 atcaaaccgaaaattttataggagcgaaaaccagaaatgacatatattacaggg-gtgaaaaaca 28039169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 32276298 - 32276361
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||||||||||||||||| |||  |||||||| |||||||  ||||||||| || ||||||||||    
T  32276298 atcaaaccgaaaattttataggggcgaaaatcgaaaatgacatatattacaagg-gtgaaaaaca 32276361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 2e-35; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 420 - 580
Target Start/End: Complemental strand, 16873519 - 16873359
Alignment:
Q  420 aggaatttctccaacaaaatcattgttactcaaatccaaccatttcaatctcttcaactgaagtaactcatgtggtaactcaccatggaaactattgcga 519  Q
    ||||||||||||||||||||||||||  ||||| || || |  |||| ||||| ||  ||||||||||| ||||| ||||||||||||||||||||||      
T  16873519 aggaatttctccaacaaaatcattgtagctcaagtctaatctcttcagtctctgcagatgaagtaactcttgtggaaactcaccatggaaactattgcct 16873420  T
Q  520 tgtagatcaagaacagcaaggaaagaaagatttcccaattgaggagaaattgtaccttcaa 580  Q
    ||||| ||||||| | |||||||||| ||||||||||||||||  ||||||||||||||||    
T  16873419 tgtaggtcaagaataacaaggaaagagagatttcccaattgagaggaaattgtaccttcaa 16873359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 18546447 - 18546376
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaacaatagtaac 88  Q
    |||||||||||||||||| ||||||||||| | |||||||  |||||||||||| ||||||||||||| ||||    
T  18546447 atcaaaccgaaaattttataggaacgaaaaccgaaaatgacatatattacaggg-gtgaaaaacaatattaac 18546376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 572 - 623
Target Start/End: Complemental strand, 16872553 - 16872502
Alignment:
Q  572 taccttcaaggtacatattactaagattcaatgcatttactcttccatgatg 623  Q
    ||||||||||   ||||||||||||||||||||| |||||||||||||||||    
T  16872553 taccttcaagtcccatattactaagattcaatgcctttactcttccatgatg 16872502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 285 - 364
Target Start/End: Complemental strand, 16873578 - 16873503
Alignment:
Q  285 tcctttgatgaaatttgatttccaatctagatactctaacattgacaagttggatatagattgaggaatagctccaacaa 364  Q
    ||||||||||| ||||||| |  ||||||| ||||||||||||||||||||||    ||||||||||||  |||||||||    
T  16873578 tcctttgatgagatttgatcttaaatctaggtactctaacattgacaagttgg----agattgaggaatttctccaacaa 16873503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 46827986 - 46828040
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacaggga 70  Q
    |||||||||||||||||||||| ||||||| | |||||||  |||||||||||||    
T  46827986 atcaaaccgaaaattttacagggacgaaaaccgaaaatgacctatattacaggga 46828040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 119 - 211
Target Start/End: Complemental strand, 16873671 - 16873580
Alignment:
Q  119 tgtaatgttgtgagtatagcatacccgatgaagagttatttgctagatgaatttcttcaagtgatgacatgttagaaattgttgttggtatga 211  Q
    ||||||| ||||||||||  ||||| ||| | |||||  | |||| ||| |||||||||||||  |||||||| |||||||||||||||||||    
T  16873671 tgtaatggtgtgagtataa-atacctgataaggagtttctagctaaatggatttcttcaagtgtagacatgttggaaattgttgttggtatga 16873580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 54014630 - 54014567
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||||||||||||||||| ||| ||||||| | |||||||  |||||||||||| ||||||||||    
T  54014630 atcaaaccgaaaattttatagggacgaaaaccgaaaatgacatatattacaggg-gtgaaaaaca 54014567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 24721193 - 24721139
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacaggga 70  Q
    |||||||||||||||||| |||| |||||| | |||||||  |||||||||||||    
T  24721193 atcaaaccgaaaattttataggagcgaaaaccgaaaatgacatatattacaggga 24721139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 29169863 - 29169813
Alignment:
Q  17 tcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacag 67  Q
    ||||||||||||||||| ||| ||||||||  ||||||| |||||||||||    
T  29169863 tcaaaccgaaaattttatagggacgaaaataaaaaatgacttatattacag 29169813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 54014768 - 54014822
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacaggga 70  Q
    |||||||||||||||||| ||| ||||||| | |||||||  |||||||||||||    
T  54014768 atcaaaccgaaaattttatagggacgaaaaccgaaaatgacatatattacaggga 54014822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 5047379 - 5047442
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||||||||||||||||| |||  |||||| | |||||||  |||||||||||| ||||||||||    
T  5047379 atcaaaccgaaaattttataggggcgaaaaccgaaaatgacatatattacaggg-gtgaaaaaca 5047442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 25484189 - 25484126
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||||||||||||||||| |||  |||||| | |||||||  |||||||||||| ||||||||||    
T  25484189 atcaaaccgaaaattttataggggcgaaaaccgaaaatgacatatattacaggg-gtgaaaaaca 25484126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 40717571 - 40717634
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||||||||||||||||| ||| ||||||| | ||||| |  |||||||||||| ||||||||||    
T  40717571 atcaaaccgaaaattttatagggacgaaaaccgaaaataacatatattacaggg-gtgaaaaaca 40717634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 51831474 - 51831537
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||||||||||||||||||| |  |||||| | |||||||  |||||||||||| ||||||||||    
T  51831474 atcaaaccgaaaattttacaagggcgaaaaccaaaaatgacctatattacaggg-gtgaaaaaca 51831537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 24919881 - 24919944
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||||||||||||||||||||| ||||||| | |||||||  |||||||||||| ||||||||||    
T  24919881 atcaaaccgaaaattttacagggacgaaaaccgaaaatgacatatattacaggg-gtgaaaaaca 24919944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 46483834 - 46483897
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||||||||||||||||| ||||||||||| | ||| |||  |||||||||||| ||||||||||    
T  46483834 atcaaaccgaaaattttataggaacgaaaaccgaaagtgacatatattacaggg-gtgaaaaaca 46483897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 18024684 - 18024626
Alignment:
Q  19 aaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaa 78  Q
    ||||||||||||||| ||| ||||||||| |||||||  |||||||||||| ||||||||    
T  18024684 aaaccgaaaattttatagggacgaaaatcgaaaatgacatatattacaggg-gtgaaaaa 18024626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 3158459 - 3158409
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattaca 66  Q
    |||||||||||||||||| |||| |||||||| |||||||  |||||||||    
T  3158459 atcaaaccgaaaattttataggagcgaaaatcgaaaatgacatatattaca 3158409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 24932165 - 24932218
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacaggg 69  Q
    |||||||||||||||||| |||  |||||||| |||||||  ||||||||||||    
T  24932165 atcaaaccgaaaattttataggggcgaaaatcaaaaatgacatatattacaggg 24932218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 813630 - 813693
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||||| ||||||||||| | || |||||||| |||||||  |||||||||||| ||||||||||    
T  813630 atcaaatcgaaaattttataagagcgaaaatcgaaaatgacctatattacaggg-gtgaaaaaca 813693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 3223115 - 3223052
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    ||||||||||||||||||||||  |||||  | |||||||  |||||||||||| ||||||||||    
T  3223115 atcaaaccgaaaattttacaggggcgaaatccaaaaatgacctatattacaggg-gtgaaaaaca 3223052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 3333002 - 3333065
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    ||||| |||||||||||| ||| ||||||| | |||||||  |||||||||||| ||||||||||    
T  3333002 atcaacccgaaaattttatagggacgaaaaccgaaaatgacctatattacaggg-gtgaaaaaca 3333065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 12180142 - 12180205
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||||||||||||||||| ||| ||||||||| ||| ||   |||||||||||| ||||||||||    
T  12180142 atcaaaccgaaaattttatagggacgaaaatcaaaattggcatatattacaggg-gtgaaaaaca 12180205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 30165547 - 30165484
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||||||||||||||||| ||| ||||||| |  ||||||  |||||||||||| ||||||||||    
T  30165547 atcaaaccgaaaattttatagggacgaaaaccggaaatgacatatattacaggg-gtgaaaaaca 30165484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 37101523 - 37101586
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||||||||||| ||||| |||| |||||| | |||||||  |||||||||||| ||||||||||    
T  37101523 atcaaaccgaaagttttataggagcgaaaaccgaaaatgacatatattacaggg-gtgaaaaaca 37101586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 27418117 - 27418187
Alignment:
Q  9 gatggacatcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||||| ||||||||||||||||||||||  |||||| | |||||||  |||||||||||| ||||||||||    
T  27418117 gatggaaatcaaaccgaaaattttacaggggcgaaaaccgaaaatgacctatattacaggg-gtgaaaaaca 27418187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 10761140 - 10761203
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||||||||||||||||| |||  |||||||| |||||||  |||||||||||| ||||||||||    
T  10761140 atcaaaccgaaaattttataggggcgaaaatcgaaaatgacatatattacaggg-gtgaaaaaca 10761203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 22981021 - 22981084
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||||||||||||||||| |||| |||||| | |||||||  |||||||||||| ||||||||||    
T  22981021 atcaaaccgaaaattttataggagcgaaaaccgaaaatgacatatattacaggg-gtgaaaaaca 22981084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 12317611 - 12317541
Alignment:
Q  9 gatggacatcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||||| ||||||||||||||||||||||  |||||| | ||||| |  |||||||||||| ||||||||||    
T  12317611 gatggaaatcaaaccgaaaattttacaggggcgaaaaccgaaaataacctatattacaggg-gtgaaaaaca 12317541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 13201879 - 13201940
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaa 78  Q
    |||||||||||||||||| ||| ||||||||  |||||||  |||||||||||| ||||||||    
T  13201879 atcaaaccgaaaattttatagggacgaaaattgaaaatgacctatattacaggg-gtgaaaaa 13201940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 37597775 - 37597722
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacaggg 69  Q
    |||||||||||||||||| ||| ||||||||  |||||||  ||||||||||||    
T  37597775 atcaaaccgaaaattttatagggacgaaaattgaaaatgacatatattacaggg 37597722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 12318697 - 12318749
Alignment:
Q  17 tcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacaggg 69  Q
    ||||||||||||||||| ||| ||||||| | |||||||  ||||||||||||    
T  12318697 tcaaaccgaaaattttatagggacgaaaaccaaaaatgacctatattacaggg 12318749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 17713523 - 17713460
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||||||||||||||||| |||  |||||| | |||||||  |||||||||||| ||||||||||    
T  17713523 atcaaaccgaaaattttataggggcgaaaaccaaaaatgacctatattacaggg-gtgaaaaaca 17713460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 18609343 - 18609280
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||||||||||||||||| ||| ||||||| |  ||||||  ||||||||||||| |||||||||    
T  18609343 atcaaaccgaaaattttatagggacgaaaaccggaaatgacatatattacaggga-tgaaaaaca 18609280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 23352073 - 23352010
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||||||||||||||||| |||  |||||| | |||||||  ||||||||||||| |||||||||    
T  23352073 atcaaaccgaaaattttataggggcgaaaaccaaaaatgacatatattacaggga-tgaaaaaca 23352010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 23382885 - 23382948
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    ||||||||||||| |||| |||  |||||||| |||||||  |||||||||||| ||||||||||    
T  23382885 atcaaaccgaaaagtttataggggcgaaaatcgaaaatgatatatattacaggg-gtgaaaaaca 23382948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 27417245 - 27417182
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||||||||||||||||||| | ||||||||  |||||||   ||||||||||| ||||||||||    
T  27417245 atcaaaccgaaaattttacatggacgaaaattgaaaatgaccgatattacaggg-gtgaaaaaca 27417182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 28004713 - 28004650
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||||||||||||||||| ||| |||||||   |||||||  |||||||||||| ||||||||||    
T  28004713 atcaaaccgaaaattttatagggacgaaaactgaaaatgacatatattacaggg-gtgaaaaaca 28004650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 28062015 - 28061952
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||||||||||||||||| ||| |||||||   |||||||  |||||||||||| ||||||||||    
T  28062015 atcaaaccgaaaattttatagggacgaaaactgaaaatgacatatattacaggg-gtgaaaaaca 28061952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 29579921 - 29579984
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||||||| ||||||||| |||| ||||||||  ||||||  |||||||||||| ||||||||||    
T  29579921 atcaaaccaaaaattttataggagcgaaaatcagaaatgacctatattacaggg-gtgaaaaaca 29579984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 22324513 - 22324460
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacaggg 69  Q
    |||||||||||||||||| ||||||||||| | |||||||  ||||||||||||    
T  22324513 atcaaaccgaaaattttataggaacgaaaaccgaaaatgacatatattacaggg 22324460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 18638345 - 18638408
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||||||||||||||||| ||| ||||||| | |||||||  |||||||||||| ||||||||||    
T  18638345 atcaaaccgaaaattttatagggacgaaaaccaaaaatgacatatattacaggg-gtgaaaaaca 18638408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 19675821 - 19675884
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||||||||||||||||| |||| |||||| | |||||||  |||||||||||| ||||||||||    
T  19675821 atcaaaccgaaaattttataggagcgaaaaccgaaaatgacatatattacaggg-gtgaaaaaca 19675884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 26717302 - 26717365
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    ||||||||| |||||||| |||| |||||||| |||||||  ||||||||| |||||||||||||    
T  26717302 atcaaaccggaaattttataggagcgaaaatcgaaaatgacatatattaca-ggagtgaaaaaca 26717365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 39489225 - 39489165
Alignment:
Q  19 aaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    ||||||||||||||| |||  |||||||| |||||||  ||||||||| |||||||||||||    
T  39489225 aaaccgaaaattttataggggcgaaaatcgaaaatgacatatattaca-ggagtgaaaaaca 39489165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 32607 - 32670
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||||||||||||||||| |||  |||||| | |||||||  |||||||||||| ||||||||||    
T  32607 atcaaaccgaaaattttataggggcgaaaaccgaaaatgacatatattacaggg-gtgaaaaaca 32670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 6458135 - 6458198
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    ||||||||||||||||||||||  |||||| | |||||||  || ||||||||| ||||||||||    
T  6458135 atcaaaccgaaaattttacaggggcgaaaaccaaaaatgacataaattacaggg-gtgaaaaaca 6458198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 18909631 - 18909583
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatatta 64  Q
    |||||||||||||||||||||| ||||||| | |||||||  |||||||    
T  18909631 atcaaaccgaaaattttacagggacgaaaaccgaaaatgacatatatta 18909583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 23573235 - 23573172
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||||||||||||||||| |||  |||||||| |||||||  |||||||||| | ||||||||||    
T  23573235 atcaaaccgaaaattttataggggcgaaaatcaaaaatgatatatattacagag-gtgaaaaaca 23573172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 3436 - 3373
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||||||||||||||||| |||  |||||||| |||||||  |||||||||||| ||||||||||    
T  3436 atcaaaccgaaaattttataggggcgaaaatcgaaaatgacatatattacaggg-gtgaaaaaca 3373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 7579045 - 7579108
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||||||| ||||||||| ||||||||||| | ||||| | |||||||||||||| |||||||||    
T  7579045 atcaaaccaaaaattttataggaacgaaaaccgaaaataacttatattacaggga-tgaaaaaca 7579108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 29690677 - 29690740
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||||||||||||||||| |||  |||||||| |||||||  |||||||||||| ||||||||||    
T  29690677 atcaaaccgaaaattttataggggcgaaaatcgaaaatgacatatattacaggg-gtgaaaaaca 29690740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 1950017 - 1950079
Alignment:
Q  17 tcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    ||||||||||||||||| ||| ||||||| | |||||||  |||||||||||| ||||||||||    
T  1950017 tcaaaccgaaaattttatagggacgaaaaccgaaaatgacctatattacaggg-gtgaaaaaca 1950079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 1948833 - 1948770
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    ||||||||||||||||||||||  |||||| | || ||||  |||||||||||| ||||||||||    
T  1948833 atcaaaccgaaaattttacaggggcgaaaaccgaatatgacctatattacaggg-gtgaaaaaca 1948770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 10542114 - 10542051
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||||||||||||||||| |||  |||||||| |||||||  ||||||||| || ||||||||||    
T  10542114 atcaaaccgaaaattttataggtgcgaaaatcgaaaatgacatatattacaagg-gtgaaaaaca 10542051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 16867833 - 16867770
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||||||||||||||||| |||  |||||| | |||||||  |||||||||||| ||||||||||    
T  16867833 atcaaaccgaaaattttataggggcgaaaaccgaaaatgacatatattacaggg-gtgaaaaaca 16867770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 20352706 - 20352643
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||||||||||||||||||||| | ||||| |  ||||||  |||||||||||| ||||||||||    
T  20352706 atcaaaccgaaaattttacagggatgaaaaccggaaatgacatatattacaggg-gtgaaaaaca 20352643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 20884106 - 20884043
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||||||||||||||||| |||  ||||||||  ||||||  |||||||||||| ||||||||||    
T  20884106 atcaaaccgaaaattttataggggcgaaaatcggaaatgacatatattacaggg-gtgaaaaaca 20884043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 26719392 - 26719340
Alignment:
Q  17 tcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacaggg 69  Q
    ||||||||||||||||| |||  |||||||| |||||||  ||||||||||||    
T  26719392 tcaaaccgaaaattttataggggcgaaaatcgaaaatgacctatattacaggg 26719340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 26989136 - 26989084
Alignment:
Q  17 tcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacaggg 69  Q
    ||||||||||||||||| |||  |||||||| |||||||  ||||||||||||    
T  26989136 tcaaaccgaaaattttataggggcgaaaatcgaaaatgacctatattacaggg 26989084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 29690537 - 29690474
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||||||||||||||||| |||  |||||| | |||||||  ||||||||| |||||||||||||    
T  29690537 atcaaaccgaaaattttataggggcgaaaaccgaaaatgacatatattaca-ggagtgaaaaaca 29690474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 38032029 - 38031966
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||||||||||||||||| | || |||||| | |||||||  |||||||||||| ||||||||||    
T  38032029 atcaaaccgaaaattttataagagcgaaaaccgaaaatgacctatattacaggg-gtgaaaaaca 38031966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 39886586 - 39886523
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||||||||||||||||| |||  ||||||||  ||||||  ||||||||||||| |||||||||    
T  39886586 atcaaaccgaaaattttataggggcgaaaatcggaaatgacatatattacaggga-tgaaaaaca 39886523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 42418734 - 42418671
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||||||||||||||||| ||| || ||||||  ||||||  |||||||||||| ||||||||||    
T  42418734 atcaaaccgaaaattttatagggacaaaaatcagaaatgacatatattacaggg-gtgaaaaaca 42418671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 3787312 - 3787249
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    ||||||||||||||||||||||  |||||| | |||||||  |||||||||||| ||||||||||    
T  3787312 atcaaaccgaaaattttacaggggcgaaaaccgaaaatgacctatattacaggg-gtgaaaaaca 3787249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 39935004 - 39934941
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||||||||||||||||| ||| ||||||||  |||||||  ||||||||| |||||||||||||    
T  39935004 atcaaaccgaaaattttatagggacgaaaataaaaaatgacgtatattaca-ggagtgaaaaaca 39934941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 13430461 - 13430514
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacaggg 69  Q
    |||||||||||||||||| |||  |||||||| |||||||  ||||||||||||    
T  13430461 atcaaaccgaaaattttataggggcgaaaatcgaaaatgacatatattacaggg 13430514  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 15231709 - 15231656
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacaggg 69  Q
    ||||||||||||||||||||||  |||||| | |||||||  ||||||||||||    
T  15231709 atcaaaccgaaaattttacaggggcgaaaaccgaaaatgacctatattacaggg 15231656  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 16087360 - 16087413
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacaggg 69  Q
    |||||| ||||||||||| ||| ||||||||| |||||||  ||||||||||||    
T  16087360 atcaaatcgaaaattttatagggacgaaaatcgaaaatgacatatattacaggg 16087413  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 5246483 - 5246554
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaacaatagtaac 88  Q
    |||||||||||||||||| |||  |||||| | |||||||  |||||||||||| ||||||| ||||| ||||    
T  5246483 atcaaaccgaaaattttataggggcgaaaaccgaaaatgacatatattacaggg-gtgaaaagcaatattaac 5246554  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 15734547 - 15734484
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||||||||||||||||| |||  |||||| | |||||||  |||||||||||| ||||||||||    
T  15734547 atcaaaccgaaaattttataggggcgaaaaccgaaaatgacatatattacaggg-gtgaaaaaca 15734484  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 29525834 - 29525897
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||| |||||||||||||||||  |||||| | |||||||  |||||||||||| ||||||||||    
T  29525834 atcataccgaaaattttacaggggcgaaaaccgaaaatgatatatattacaggg-gtgaaaaaca 29525897  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 33465821 - 33465884
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||||||||||||||||| ||| ||||||| | ||| |||  |||||||||||| ||||||||||    
T  33465821 atcaaaccgaaaattttatagggacgaaaaccgaaattgacctatattacaggg-gtgaaaaaca 33465884  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 37216452 - 37216515
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||||||||||||||||| ||| ||||||| | ||||| |  |||||||||||| ||||||||||    
T  37216452 atcaaaccgaaaattttatagggacgaaaaccgaaaataacatatattacaggg-gtgaaaaaca 37216515  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 38601243 - 38601180
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||||||||||||||||| |||  |||||| | |||||||  |||||||||||| ||||||||||    
T  38601243 atcaaaccgaaaattttataggggcgaaaaccgaaaatgacatatattacaggg-gtgaaaaaca 38601180  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 38601382 - 38601445
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||||||||||||||||| ||| ||||||| | |||||||  |||||||| ||| ||||||||||    
T  38601382 atcaaaccgaaaattttatagggacgaaaaccaaaaatgatatatattactggg-gtgaaaaaca 38601445  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 43064274 - 43064337
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||||||||||||||||| | || |||||| | |||||||  |||||||||||| ||||||||||    
T  43064274 atcaaaccgaaaattttataagagcgaaaaccgaaaatgacctatattacaggg-gtgaaaaaca 43064337  T

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Target: scaffold0809 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0809
Description:

Target: scaffold0809; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 2016 - 2068
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagg 68  Q
    |||||||| ||||||||| ||||||||||| | |||||||  |||||||||||    
T  2016 atcaaacccaaaattttataggaacgaaaaccgaaaatgacatatattacagg 2068  T

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Target: scaffold0199 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 12053 - 12116
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||||||||||||||||| |||  |||||| | |||||||  |||||||||||| ||||||||||    
T  12053 atcaaaccgaaaattttataggggcgaaaaccgaaaatgacatatattacaggg-gtgaaaaaca 12116  T

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Target: scaffold0098 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 4172 - 4235
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||||||||||||||||| |||  |||||| | |||||||  |||||||||||| ||||||||||    
T  4172 atcaaaccgaaaattttataggggcgaaaaccgaaaatgacatatattacaggg-gtgaaaaaca 4235  T

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Target: scaffold0035 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 72253 - 72190
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||||||||||||||||| |||  ||||||||  ||||||  |||||||||||| ||||||||||    
T  72253 atcaaaccgaaaattttataggggcgaaaatcggaaatgacatatattacaggg-gtgaaaaaca 72190  T

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Target: scaffold0009 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 24836 - 24773
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||||||||||||||||| ||| | |||||||  ||||||  |||||||||||| ||||||||||    
T  24836 atcaaaccgaaaattttatagggatgaaaatcggaaatgacatatattacaggg-gtgaaaaaca 24773  T

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Target: scaffold0001 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 403680 - 403743
Alignment:
Q  16 atcaaaccgaaaattttacaggaacgaaaatctaaaatgaattatattacagggagtgaaaaaca 80  Q
    |||||||||||||||||| ||||||||||| | ||||| |   ||||||||||| ||||||||||    
T  403680 atcaaaccgaaaattttataggaacgaaaaccaaaaataacacatattacaggg-gtgaaaaaca 403743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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