View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7160_low_2 (Length: 401)

Name: NF7160_low_2
Description: NF7160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7160_low_2
NF7160_low_2
[»] chr5 (1 HSPs)
chr5 (1-388)||(33466849-33467235)
[»] chr6 (1 HSPs)
chr6 (115-200)||(34168778-34168863)
[»] chr4 (2 HSPs)
chr4 (122-201)||(42455771-42455850)
chr4 (118-201)||(45661551-45661634)
[»] chr3 (1 HSPs)
chr3 (115-201)||(46940937-46941023)
[»] chr1 (1 HSPs)
chr1 (115-201)||(30688414-30688500)
[»] chr2 (1 HSPs)
chr2 (118-199)||(30602349-30602430)


Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 33466849 - 33467235
Alignment:
Q  1 tataattgggaagtataagcttgtaaacctcgagagaaaatcatgtgtggatcaatgtgtatgataaatatactttctacctaactacatactcnnnnnn 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  33466849 tataattgggaagtataagcttgtaaacctcgagagaaaatcatgtgtggatcaatgtgtatgataaatatactttctacctaactacatactcatatat 33466948  T
Q  101 nnnnnnnnnnnnncaatgattaattacatatcaatagaaggcaagcgaacaataagttggactgctaggtctttttgaatagcaaaaccaattctcgtaa 200  Q
                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33466949 tatatttatatatcaatgattaattacatatcaatagaaggcaagcgaacaataagttggactgctaggtctttttgaatagcaaaaccaattcttgtaa 33467048  T
Q  201 atcatctgacagtaagcatgcaaacatgcaaaatgttgatgatttttcttaatgcatagtactaaatttgaactaatgttggaggtggaaaaagtaactt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  33467049 atcatctgacagtaagcatgcaaacatgcaaaatgttgatgatttttcttaatgcatagtactaaattt-aactaatgttggaggtggaaaaagtaactt 33467147  T
Q  301 ctggataatttgtatataattgtgtcagtgtttcagtttctttcgtttatcacaatagaacgatttgctttcaaatggctaatgatgt 388  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33467148 ctggataatttgtatataattgtgtcagtgtttcggtttctttcgtttatcacaatagaacgatttgctttcaaatggctaatgatgt 33467235  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 200
Target Start/End: Original strand, 34168778 - 34168863
Alignment:
Q  115 aatgattaattacatatcaatagaaggcaagcgaacaataagttggactgctaggtctttttgaatagcaaaaccaattctcgtaa 200  Q
    |||||||||||||| || |||||||||||||||  | | ||||||  | |||||| ||||||| |||||||||||||| |||||||    
T  34168778 aatgattaattacacatgaatagaaggcaagcgggcgacaagttgcgccgctaggcctttttggatagcaaaaccaatcctcgtaa 34168863  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 122 - 201
Target Start/End: Complemental strand, 42455850 - 42455771
Alignment:
Q  122 aattacatatcaatagaaggcaagcgaacaataagttggactgctaggtctttttgaatagcaaaaccaattctcgtaaa 201  Q
    |||||||||| |||||||||||||||| ||| ||||||  ||||||   ||||||||||  ||||  |||||||||||||    
T  42455850 aattacatatgaatagaaggcaagcgagcaacaagttgtgctgctaaacctttttgaatgacaaagtcaattctcgtaaa 42455771  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 118 - 201
Target Start/End: Original strand, 45661551 - 45661634
Alignment:
Q  118 gattaattacatatcaatagaaggcaagcgaacaataagttggactgctaggtctttttgaatagcaaaaccaattctcgtaaa 201  Q
    |||||||||||||| | |||||||||||||  ||| ||  || || | |||||||||||| |||| ||||||||| ||||||||    
T  45661551 gattaattacatatgagtagaaggcaagcgtgcaacaaactgtaccgttaggtctttttggatagtaaaaccaatcctcgtaaa 45661634  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 201
Target Start/End: Complemental strand, 46941023 - 46940937
Alignment:
Q  115 aatgattaattacatatcaatagaaggcaagcgaacaataagttggactgctaggtctttttgaatagcaaaaccaattctcgtaaa 201  Q
    |||||||||||||| || ||||||||| || |   ||| |||||| || |||||||||||||| ||| ||||| ||||| |||||||    
T  46941023 aatgattaattacacatgaatagaaggtaaacaggcaacaagttgcaccgctaggtctttttggataacaaaatcaattttcgtaaa 46940937  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 201
Target Start/End: Original strand, 30688414 - 30688500
Alignment:
Q  115 aatgattaattacatatcaatagaaggcaagcgaacaataagttggactgctaggtctttttgaatagcaaaaccaattctcgtaaa 201  Q
    |||||||||||||| || |||||| ||||||||  ||| ||| ||  | |||||| ||||||| ||| |||||||||| ||||||||    
T  30688414 aatgattaattacacatgaatagatggcaagcgggcaacaagctgcgccgctaggcctttttggataacaaaaccaatcctcgtaaa 30688500  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 199
Target Start/End: Original strand, 30602349 - 30602430
Alignment:
Q  118 gattaattacatatcaatagaaggcaagcgaacaataagttggactgctaggtctttttgaatagcaaaaccaattctcgta 199  Q
    ||||||||||| || ||||||||||| |||  ||| ||| ||  |||||||| ||||||| || ||||||||||| ||||||    
T  30602349 gattaattacacatgaatagaaggcatgcgggcaacaagctgcgctgctaggcctttttggatggcaaaaccaatcctcgta 30602430  T

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