View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7160_low_4 (Length: 303)
Name: NF7160_low_4
Description: NF7160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7160_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 295
Target Start/End: Original strand, 40994025 - 40994313
Alignment:
| Q |
18 |
gtaatatatacaaccaaacattcaaaagtgttaaaaatcaaaccatataactatatatcaatgactgctatatatgttaaatatt-----------gaga |
106 |
Q |
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| T |
40994025 |
gtaatatatacaaccaaacattcaaaagtgttaaaaatcaaaccatataactatatatcaatgactactatatatgttaaatatttgagagaaaaagaga |
40994124 |
T |
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| Q |
107 |
gacatgaaatgtaaagtattttactcacctcaaatataacttgtggacttatgtccagtgtgagtttttgaagcaatgggcaactgttgagcaagaattc |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
40994125 |
gacatgaaatgtaaagtattttactcacctcaaatataacttgtggacttatgtccaatgtaagtttttcaagcaatgggcaactgttgagcaagaattc |
40994224 |
T |
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| Q |
207 |
aattccacaaagctcatatggatgcatttgagtctttagaatcaaatgttttacattcaaagcactttgcatccgctccgattcatctc |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40994225 |
aattccacaaagctcatatggatgcatttgagtctttagaatcaaatgttttacattcaaagcactttgcatccgctccgattcatctc |
40994313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 33 - 267
Target Start/End: Original strand, 40986280 - 40986521
Alignment:
| Q |
33 |
aaacattcaaaagtgttaaaaatcaaaccatataactatatatcaatgactgctatata------tgttaaatattgagagacatgaaatgtaaag-tat |
125 |
Q |
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|||||||||||||||||||||||||||||| |||||||||| ||||| ||| |||| || || | | | ||||||||||||||||||| | ||| |
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| T |
40986280 |
aaacattcaaaagtgttaaaaatcaaaccacataactatatttcaataactactatgtaaaatattgagagaaaatgagagacatgaaatgtaacggtat |
40986379 |
T |
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| Q |
126 |
tttactcacctcaaatataacttgtggacttatgtccagtgtgagtttttgaagcaatgggcaactgttgagcaagaattcaattccacaaagctcatat |
225 |
Q |
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| T |
40986380 |
ttgactcaccttaaatataacttgttgacttatgtccaatgtgagtttttctagcaacgggcaactgttaagcaagaattcaaatccacaaagctcatat |
40986479 |
T |
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| Q |
226 |
ggatgcatttgagtctttagaatcaaatgttttacattcaaa |
267 |
Q |
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||||||||| || ||||||||||||||| ||||||||||| |
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| T |
40986480 |
ttatgcatttgtgtttttagaatcaaatgtcttacattcaaa |
40986521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 160
Target Start/End: Original strand, 40989642 - 40989789
Alignment:
| Q |
19 |
taatatatacaaccaaacattcaaaagtgttaaaaatcaaaccatataactatatatcaa-tgactgctatatatgttaaatattgagagacat------ |
111 |
Q |
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|||||||||| | ||||||||||||||||||||| |||| |||||||||||| ||||| ||||| |||| |||||||||||||||| || |
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| T |
40989642 |
taatatatacgagcaaacattcaaaagtgttaaacc-caaagcatataactatacatcaaatgactactat----gttaaatattgagagaaatagagac |
40989736 |
T |
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| Q |
112 |
--gaaatgtaaagtatttt--actcacctcaaatataacttgtggacttatgt |
160 |
Q |
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||| |||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
40989737 |
ttgaagtgtaaagtatatttgactcacctcaaatataacttgtggacttatgt |
40989789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 18 - 279
Target Start/End: Complemental strand, 21180888 - 21180642
Alignment:
| Q |
18 |
gtaatatatacaaccaaacattcaaaagtgttaaaaatcaaaccatataactatatatcaatgactgctatatatgttaaatattgagagacatgaaatg |
117 |
Q |
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||||||||||||||||| ||||||||||| |||||||||||||||||| |||||| | | || ||||| |||||||||| | |||||| |
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| T |
21180888 |
gtaatatatacaaccaatcattcaaaagtattaaaaatcaaaccatat----------caatgattacaat----gttaagtattgagagaga-gaaatg |
21180804 |
T |
|
| Q |
118 |
taaagtattttactcacctcaaatataacttgtggacttatgtccagtgtgagtttttgaagcaatgggcaactgttgagcaagaattcaattccacaaa |
217 |
Q |
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|||||||||| ||| ||||||||||||| ||||||||||||||||| | ||||||||| ||||||||||||||||||||||| |||||||| |||||||| |
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| T |
21180803 |
taaagtatttgactgacctcaaatataagttgtggacttatgtccaatatgagtttttcaagcaatgggcaactgttgagcatgaattcaaatccacaaa |
21180704 |
T |
|
| Q |
218 |
gctcatatggatgcatttgagtctttagaatcaaatgttttacattcaaagcactttgcatc |
279 |
Q |
| |
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||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||| |
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| T |
21180703 |
gctcatatgaatgcattttagtctttagagtcaaatgttttacattcaaagcactttgcatc |
21180642 |
T |
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