View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7161_low_2 (Length: 245)
Name: NF7161_low_2
Description: NF7161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7161_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 17 - 214
Target Start/End: Complemental strand, 11415382 - 11415184
Alignment:
| Q |
17 |
acttatcaggcttgtcattcaatggtttctccttcactttccct-cactctctattttgtttttgatctcatcaaatatgtactcgttttttgttgaaga |
115 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
11415382 |
acttatcaggcctgtcattcaatggtttctccttcactttcccttcactatctattttgtttttggtctcatcaagtatgtactcgttttttgttgaaga |
11415283 |
T |
|
| Q |
116 |
aatattatccaatatttatttaaggatatatcttcaactaaagagagtaaaatttatttttagttgaaaaaatattgttgaataaaaacatttttctat |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11415282 |
aatattatccaatatttatttaaggatatatcttcaactaaagagagtaaaatttatttttagttgaaaaaatattgttgaataaaaacatttttctat |
11415184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University