View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7162_high_1 (Length: 641)

Name: NF7162_high_1
Description: NF7162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7162_high_1
NF7162_high_1
[»] chr4 (6 HSPs)
chr4 (1-317)||(20326823-20327139)
chr4 (505-631)||(20343433-20343559)
chr4 (313-391)||(20343337-20343415)
chr4 (176-308)||(7451172-7451306)
chr4 (8-97)||(7451385-7451474)
chr4 (420-488)||(20495751-20495819)
[»] chr8 (2 HSPs)
chr8 (401-488)||(21808707-21808794)
chr8 (401-488)||(21815077-21815164)
[»] chr2 (3 HSPs)
chr2 (414-488)||(29602668-29602742)
chr2 (52-145)||(17659387-17659480)
chr2 (517-565)||(17659616-17659663)
[»] chr7 (7 HSPs)
chr7 (414-488)||(15931165-15931239)
chr7 (203-311)||(2934670-2934778)
chr7 (186-258)||(41572590-41572664)
chr7 (420-488)||(23531399-23531467)
chr7 (414-481)||(15833871-15833938)
chr7 (414-488)||(12537359-12537433)
chr7 (342-374)||(2934609-2934641)
[»] scaffold0071 (1 HSPs)
scaffold0071 (414-474)||(43254-43314)
[»] chr3 (2 HSPs)
chr3 (414-474)||(15418924-15418984)
chr3 (222-258)||(5548596-5548632)
[»] chr1 (2 HSPs)
chr1 (414-488)||(554301-554375)
chr1 (220-274)||(7064025-7064079)
[»] scaffold0443 (1 HSPs)
scaffold0443 (449-488)||(5538-5577)
[»] chr5 (1 HSPs)
chr5 (206-251)||(39793857-39793902)


Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 20326823 - 20327139
Alignment:
Q  1 aagttttggctctagcctgattgataggaattttagtcggataatcggagaaatgttttaggacaactcaccccgagcattccgtaaaatcaattcagat 100  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  20326823 aagtttcggctctagcctgattgataggaattttagtcggataatcggagaaatgtttcagaacaactcaccccgagcattccgtaaaatcaattcagat 20326922  T
Q  101 aatatgtttgctgcatactaactttaataaataatttaatatgataattatgacaaaacaattaaacttggatatattatatatagttagtgatcctagt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20326923 aatatgtttgctgcatactaactttaataaataatttaatatgataattatgacaaaacaattaaacttggatatattatatatagttagtgatcctagt 20327022  T
Q  201 ttccccatatcactttcaccctaggataggtggaagtcactgagaccttatgtctcattcttatcctgttatttcttttcagattcgcaggtttctcgcg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20327023 ttccccatatcactttcaccctaggataggtggaagtcactgagaccttatgtctcattcttatcctgttatttcttttcagattcgcaggtttctcgcg 20327122  T
Q  301 agaagggtaagcataaa 317  Q
    |||||||||||||||||    
T  20327123 agaagggtaagcataaa 20327139  T

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Target: chr4; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 505 - 631
Target Start/End: Original strand, 20343433 - 20343559
Alignment:
Q  505 tgtactcgttagtcagtgcatgtttacttcagacaggattatgtaatttgtactcatcagcttgtactttgctattttattcggttaatattaattttaa 604  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20343433 tgtactcgttagtcagtgcatgtttacttcagacaggattatgtaatttgtactcatcagcttgtactttgctattttattcggttaatattaattttaa 20343532  T
Q  605 tatttttgtacgtctactgatgtccat 631  Q
    |||||||||||||||||||||||||||    
T  20343533 tatttttgtacgtctactgatgtccat 20343559  T

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Target: chr4; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 313 - 391
Target Start/End: Original strand, 20343337 - 20343415
Alignment:
Q  313 ataaagaagttgcatgacgctcgaggtgtattgtctgatattagtattatgttgatagtgtcgtgtagtatgtaatagg 391  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  20343337 ataaagaagttgcatgacgctcgaggtgtattgtctgatattagtattatgttgatagtgtcgtgtagtatgtactagg 20343415  T

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Target: chr4; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 176 - 308
Target Start/End: Complemental strand, 7451306 - 7451172
Alignment:
Q  176 attatatatagttagtgatcctagtttc-cccatatcactttcaccctaggataggtggaagtcactgagaccttatgtctcattcttatcc-tgttatt 273  Q
    |||||| |||||||| |||||||||||  ||| ||||| | |||||||||||||||||||| | |||||||||||||||||||  |  |||| | |||||    
T  7451306 attatagatagttagcgatcctagtttgtcccgtatcattatcaccctaggataggtggaacttactgagaccttatgtctcaccccaatcctttttatt 7451207  T
Q  274 tcttttcagattcgcaggtttctcgcgagaagggt 308  Q
    ||||||||||| || ||||| |||| |||||||||    
T  7451206 tcttttcagatacgtaggttgctcgtgagaagggt 7451172  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 8 - 97
Target Start/End: Complemental strand, 7451474 - 7451385
Alignment:
Q  8 ggctctagcctgattgataggaattttagtcggataatcggagaaatgttttaggacaactcaccccgagcattccgtaaaatcaattca 97  Q
    ||||||||||||||||||||| ||||||| ||||||    ||| ||||||||| ||| |||||||||   |||||| ||||||||| |||    
T  7451474 ggctctagcctgattgataggtattttagccggatagaaagaggaatgttttaagactactcaccccagccattccataaaatcaactca 7451385  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 420 - 488
Target Start/End: Complemental strand, 20495819 - 20495751
Alignment:
Q  420 atgatttttgactcgagaacttccttgaggattctttctgggcgcgtattcaaaggggtaaagtgctcg 488  Q
    ||||||||| | || || ||||| |||||||||||||| ||||| ||||||| ||| || |||||||||    
T  20495819 atgattttttattcaagcacttctttgaggattctttcggggcgagtattcagaggagtgaagtgctcg 20495751  T

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Target: chr8 (Bit Score: 68; Significance: 5e-30; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 401 - 488
Target Start/End: Complemental strand, 21808794 - 21808707
Alignment:
Q  401 acttaagggtgccggcggaatgatttttgactcgagaacttccttgaggattctttctgggcgcgtattcaaaggggtaaagtgctcg 488  Q
    |||||| ||||| |||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  21808794 acttaatggtgctggcggaatgattttcgattcgagaacttccttgaggattctttcggggcgcgtattcaaaggggtaaagtgctcg 21808707  T

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Target: chr8; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 401 - 488
Target Start/End: Complemental strand, 21815164 - 21815077
Alignment:
Q  401 acttaagggtgccggcggaatgatttttgactcgagaacttccttgaggattctttctgggcgcgtattcaaaggggtaaagtgctcg 488  Q
    |||||| ||||| |||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  21815164 acttaatggtgctggcggaatgattttcgattcgagaacttccttgaggattctttcggggcgcgtattcaaaggggtaaagtgctcg 21815077  T

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Target: chr2 (Bit Score: 63; Significance: 5e-27; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 414 - 488
Target Start/End: Original strand, 29602668 - 29602742
Alignment:
Q  414 ggcggaatgatttttgactcgagaacttccttgaggattctttctgggcgcgtattcaaaggggtaaagtgctcg 488  Q
    ||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||    
T  29602668 ggcggaatgatttttgactcgagaacttctttgaggattctttcggggcgcgtgttcaaaggggtaaagtgctcg 29602742  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 52 - 145
Target Start/End: Original strand, 17659387 - 17659480
Alignment:
Q  52 aatgttttaggacaactcaccccgagcattccgtaaaatcaattcagataatatgtttgctgcatactaactttaataaataatttaatatgat 145  Q
    |||||||  |||| |||||||||| | |||||||||||||||   ||||||  |||||| | || ||||||||| |||||||||| ||||||||    
T  17659387 aatgtttcgggactactcaccccggggattccgtaaaatcaacctagataagttgtttgttccacactaacttttataaataattgaatatgat 17659480  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 517 - 565
Target Start/End: Original strand, 17659616 - 17659663
Alignment:
Q  517 tcagtgcatgtttacttcagacaggattatgtaatttgtactcatcagc 565  Q
    |||||||||| ||| ||||||||| |||||||| |||||||||||||||    
T  17659616 tcagtgcatgatta-ttcagacagcattatgtactttgtactcatcagc 17659663  T

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Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 414 - 488
Target Start/End: Original strand, 15931165 - 15931239
Alignment:
Q  414 ggcggaatgatttttgactcgagaacttccttgaggattctttctgggcgcgtattcaaaggggtaaagtgctcg 488  Q
    ||||| |||||||| || ||||| |||||||| || |||||||| ||||||||||||||||||||||||||||||    
T  15931165 ggcgggatgattttcgattcgagtacttccttaagtattctttcggggcgcgtattcaaaggggtaaagtgctcg 15931239  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 203 - 311
Target Start/End: Complemental strand, 2934778 - 2934670
Alignment:
Q  203 ccccatatcactttcaccctaggataggtggaagtcactgagaccttatgtctcattcttatcctgttatttcttttcagattcgcaggtttctcgcgag 302  Q
    |||||||||||| ||||| ||||||| |||||| |||||||||| ||||||||| | |  ||||  || ||||||||||||| |||| ||| |||||| |    
T  2934778 ccccatatcactatcaccttaggataagtggaactcactgagacattatgtctcgtcccaatccctttctttcttttcagatacgcatgttactcgcggg 2934679  T
Q  303 aagggtaag 311  Q
    |||||||||    
T  2934678 aagggtaag 2934670  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 186 - 258
Target Start/End: Original strand, 41572590 - 41572664
Alignment:
Q  186 gttagtgatcctagtttcccc--atatcactttcaccctaggataggtggaagtcactgagaccttatgtctcat 258  Q
    |||||| ||| ||||||||||  | |||||| |||||| ||||||||||||| ||||||| ||||||||||||||    
T  41572590 gttagttatcatagtttcccccaagatcactatcacccaaggataggtggaactcactgataccttatgtctcat 41572664  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 420 - 488
Target Start/End: Original strand, 23531399 - 23531467
Alignment:
Q  420 atgatttttgactcgagaacttccttgaggattctttctgggcgcgtattcaaaggggtaaagtgctcg 488  Q
    |||||||| || ||||||||||| |||||||| ||||| || || ||||||||||| || |||||||||    
T  23531399 atgattttcgattcgagaacttctttgaggatcctttcgggacgagtattcaaaggagtgaagtgctcg 23531467  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 481
Target Start/End: Original strand, 15833871 - 15833938
Alignment:
Q  414 ggcggaatgatttttgactcgagaacttccttgaggattctttctgggcgcgtattcaaaggggtaaa 481  Q
    ||||| |||||||| ||||| | |||||||||||||||||| |  ||||| ||||| |||||||||||    
T  15833871 ggcgggatgattttggactcaaaaacttccttgaggattctcttagggcgagtatttaaaggggtaaa 15833938  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 414 - 488
Target Start/End: Original strand, 12537359 - 12537433
Alignment:
Q  414 ggcggaatgatttttgactcgagaacttccttgaggattctttctgggcgcgtattcaaaggggtaaagtgctcg 488  Q
    ||||| |||||||| ||||| | |||||||||||||||| | || ||| | ||||| |||||||||||| |||||    
T  12537359 ggcgggatgattttggactcaaaaacttccttgaggattttctcagggtgagtatttaaaggggtaaagagctcg 12537433  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 342 - 374
Target Start/End: Complemental strand, 2934641 - 2934609
Alignment:
Q  342 attgtctgatattagtattatgttgatagtgtc 374  Q
    ||||||||||||||||||||||||| |||||||    
T  2934641 attgtctgatattagtattatgttgctagtgtc 2934609  T

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Target: scaffold0071 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 414 - 474
Target Start/End: Original strand, 43254 - 43314
Alignment:
Q  414 ggcggaatgatttttgactcgagaacttccttgaggattctttctgggcgcgtattcaaag 474  Q
    ||||| |||||||| || ||||| |||||||||||||||||||| ||||||||||||||||    
T  43254 ggcgggatgattttcgattcgagtacttccttgaggattctttcagggcgcgtattcaaag 43314  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 414 - 474
Target Start/End: Complemental strand, 15418984 - 15418924
Alignment:
Q  414 ggcggaatgatttttgactcgagaacttccttgaggattctttctgggcgcgtattcaaag 474  Q
    ||||| |||||||| || ||||| |||||||||||||||||||| ||||||||||||||||    
T  15418984 ggcgggatgattttcgattcgagtacttccttgaggattctttcagggcgcgtattcaaag 15418924  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 222 - 258
Target Start/End: Original strand, 5548596 - 5548632
Alignment:
Q  222 taggataggtggaagtcactgagaccttatgtctcat 258  Q
    |||||||||||||| |||||||||||||||| |||||    
T  5548596 taggataggtggaactcactgagaccttatggctcat 5548632  T

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Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 414 - 488
Target Start/End: Original strand, 554301 - 554375
Alignment:
Q  414 ggcggaatgatttttgactcgagaacttccttgaggattctttctgggcgcgtattcaaaggggtaaagtgctcg 488  Q
    ||||| |||||||| ||||||| |||||||||||||||| | || ||||| || || ||||||||||||||||||    
T  554301 ggcgggatgattttggactcgaaaacttccttgaggattttctcagggcgagtgtttaaaggggtaaagtgctcg 554375  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 220 - 274
Target Start/End: Complemental strand, 7064079 - 7064025
Alignment:
Q  220 cctaggataggtggaagtcactgagaccttatgtctcattcttatcctgttattt 274  Q
    |||||||||||||||| |||||||||| ||||||||||  || ||||| ||||||    
T  7064079 cctaggataggtggaactcactgagacattatgtctcaccctaatccttttattt 7064025  T

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Target: scaffold0443 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0443
Description:

Target: scaffold0443; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 449 - 488
Target Start/End: Original strand, 5538 - 5577
Alignment:
Q  449 gattctttctgggcgcgtattcaaaggggtaaagtgctcg 488  Q
    ||||||||| |||||||| |||||||||||||||||||||    
T  5538 gattctttcagggcgcgttttcaaaggggtaaagtgctcg 5577  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 251
Target Start/End: Complemental strand, 39793902 - 39793857
Alignment:
Q  206 catatcactttcaccctaggataggtggaagtcactgagaccttat 251  Q
    ||||||||| |||||||| ||||||||||| ||| |||||||||||    
T  39793902 catatcactatcaccctatgataggtggaactcagtgagaccttat 39793857  T

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