View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7162_high_2 (Length: 426)
Name: NF7162_high_2
Description: NF7162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7162_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Original strand, 32848192 - 32848607
Alignment:
| Q |
1 |
acaaagttatatcataaaattacttttctaaacttaaataaatggaccactgtactaatgcagagtcagtaaattctgacttccttggagatatttggat |
100 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32848192 |
acaaagttgtatcataaaattacttttctaaacttaaataaatggaccactgtacaaatgcagagtcagtaaattctgacttccttggagatatttggat |
32848291 |
T |
|
| Q |
101 |
gctgtagttgtaattactcaatttcgagttgggcattaattt-gattttcagannnnnnnnnnnctttcaccattaagagttccttccatcatcagaaca |
199 |
Q |
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| T |
32848292 |
gctgtagttgtaattactcaattttgagttgggcattaattttgattttcagatgtttttttt-ctttcaccattaagagttccttccatcatcagaaca |
32848390 |
T |
|
| Q |
200 |
tcctttagatatcatcatggatgttttctctctccttcattcgtatatttcaccgacatgcattggttttaatgtcatcattacaagataacaaaaatga |
299 |
Q |
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| T |
32848391 |
tcctttagatatcatcatggatgttttctctctccttcattcgtatatttcaccgacatgcattggttttaatgtcatcattacaagataacaaaaatga |
32848490 |
T |
|
| Q |
300 |
caccaacaaccataaaatgtttatcatgtgtatgaatcagacaacactataattcattatcatgtattaagcttaaagctggactgttaaccacaaaatc |
399 |
Q |
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| T |
32848491 |
caccaacaaccataaaatgtttatcatgtgtatgaatcagacaacactataattcattatcatggattaagcttaaagctggactgttaaccacaaaatc |
32848590 |
T |
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| Q |
400 |
tctcgatgatttgatgt |
416 |
Q |
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| T |
32848591 |
tctcgatgatttgatgt |
32848607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 165 - 414
Target Start/End: Complemental strand, 31733823 - 31733575
Alignment:
| Q |
165 |
tttcaccattaa--gagttccttccatcatcagaacatcctttagatatcatcatggatgttttctctctccttcattcgt---atatttcaccgacatg |
259 |
Q |
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|||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||| |||||| || |||||||| | |||||| ||||| |
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| T |
31733823 |
tttcaccattaaaagagtttcttccatcatcataacatcctttagatatcatcatggatgtattctctttctgtcattcgtcgtaggtttcactgacata |
31733724 |
T |
|
| Q |
260 |
cattggttttaatgtcatcattacaagataacaaaaatgacaccaacaaccataaaatgtttatcatgtgtatgaatcagacaacactataattcattat |
359 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||| | | ||||| ||||||||||||||||| ||||||||||||| |
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| T |
31733723 |
cattggttttaatgtcatcattacaagataacaaaaatgacaccaacatccacatattgtttgtcatgtgtatgaatcaggcaacactataatt------ |
31733630 |
T |
|
| Q |
360 |
catgtattaagcttaaagctggactgttaaccacaaaatctctc--gatgatttgat |
414 |
Q |
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|
| T |
31733629 |
--tgtattaagcttaaagctgaactggttaccgcaaaatctctcttgatgatttgat |
31733575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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