View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7162_high_6 (Length: 234)
Name: NF7162_high_6
Description: NF7162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7162_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 46246434 - 46246660
Alignment:
| Q |
1 |
ttaaaccattcactatttggctaaagatttttctcattagatgaaattgtaccnnnnnnnggatttccattgtatggggtggaaatcggtcctatcaaaa |
100 |
Q |
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| T |
46246434 |
ttaaatcattcactatttggctaaagatttttctcattagatgaaattgtacctttttttggatttccattgtatggggtggaaatcggtcctatcaaaa |
46246533 |
T |
|
| Q |
101 |
atctggaaat---gtaaatttgggttggtatttggtaattgcattgacttgcttgttataactaagaattacaatagggtatactataaatggatcaatg |
197 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46246534 |
atctggaaataatgtaaatttgggttggtatttggtaattgcattgacttgcttgttataactaagaattacaatagggtatactataaatggatcaatg |
46246633 |
T |
|
| Q |
198 |
gccagtgacgatggaaatgaatagatt |
224 |
Q |
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||||||||||||||||||||||||||| |
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| T |
46246634 |
gccagtgacgatggaaatgaatagatt |
46246660 |
T |
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